Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QM316_RS13775 Genome accession   NZ_CP125862
Coordinates   2770565..2770960 (+) Length   131 a.a.
NCBI ID   WP_000932585.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 18-02202-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2765565..2775960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM316_RS13745 (QM316_13725) - 2766767..2767171 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  QM316_RS13750 (QM316_13730) - 2767582..2767659 (+) 78 Protein_2673 hypothetical protein -
  QM316_RS13755 (QM316_13735) - 2767791..2768024 (+) 234 WP_000384523.1 DUF1146 family protein -
  QM316_RS13760 (QM316_13740) murA 2768135..2769400 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QM316_RS13765 (QM316_13745) fabZ 2769434..2769874 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QM316_RS13770 (QM316_13750) - 2769931..2770371 (-) 441 WP_000846746.1 YwpF-like family protein -
  QM316_RS13775 (QM316_13755) ssb 2770565..2770960 (+) 396 WP_000932585.1 single-stranded DNA-binding protein Machinery gene
  QM316_RS13780 (QM316_13760) sceD 2771349..2772044 (+) 696 WP_000751999.1 lytic transglycosylase SceD -
  QM316_RS13785 (QM316_13765) tenA 2772431..2773120 (+) 690 WP_000396067.1 thiaminase II -
  QM316_RS13790 (QM316_13770) thiD 2773113..2773943 (+) 831 WP_000594952.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QM316_RS13795 (QM316_13775) thiM 2773927..2774718 (+) 792 WP_001108488.1 hydroxyethylthiazole kinase -
  QM316_RS13800 (QM316_13780) thiE 2774720..2775361 (+) 642 WP_000483160.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14984.06 Da        Isoelectric Point: 6.2281

>NTDB_id=833122 QM316_RS13775 WP_000932585.1 2770565..2770960(+) (ssb) [Staphylococcus aureus strain 18-02202-1]
MLNKIIIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGGIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=833122 QM316_RS13775 WP_000932585.1 2770565..2770960(+) (ssb) [Staphylococcus aureus strain 18-02202-1]
ATGCTAAATAAAATCATAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGGAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

98.473

100

0.985
  ssb Staphylococcus aureus MW2

97.71

100

0.977