Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QM316_RS04275 Genome accession   NZ_CP125862
Coordinates   843960..844832 (-) Length   290 a.a.
NCBI ID   WP_000620178.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 18-02202-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 838960..849832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM316_RS04265 (QM316_04260) trmFO 840248..841555 (-) 1308 WP_221922317.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  QM316_RS04270 (QM316_04265) topA 841711..843786 (-) 2076 WP_001557331.1 type I DNA topoisomerase -
  QM316_RS04275 (QM316_04270) dprA 843960..844832 (-) 873 WP_000620178.1 DNA-processing protein DprA Machinery gene
  QM316_RS04280 (QM316_04275) fmhC 845004..846248 (-) 1245 WP_000672857.1 FemA/FemB family glycyltransferase FmhC -
  QM316_RS04285 (QM316_04280) - 846276..846428 (-) 153 Protein_815 cell wall hydrolase -
  QM316_RS04290 (QM316_04285) - 846433..846488 (-) 56 Protein_816 YSIRK-type signal peptide-containing protein -
  QM316_RS04295 (QM316_04290) sucD 846715..847623 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  QM316_RS04300 (QM316_04295) sucC 847645..848811 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  QM316_RS04305 (QM316_04300) - 848920..849687 (-) 768 WP_000176391.1 ribonuclease HII -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=833107 QM316_RS04275 WP_000620178.1 843960..844832(-) (dprA) [Staphylococcus aureus strain 18-02202-1]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENAHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGVDAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=833107 QM316_RS04275 WP_000620178.1 843960..844832(-) (dprA) [Staphylococcus aureus strain 18-02202-1]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGCTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGTTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979