Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QM317_RS02830 Genome accession   NZ_CP125861
Coordinates   605350..606336 (-) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 12-03119     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 600350..611336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM317_RS02805 (QM317_02805) - 600610..600957 (-) 348 WP_001242103.1 hypothetical protein -
  QM317_RS02810 (QM317_02810) - 601143..601736 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  QM317_RS02815 (QM317_02815) - 601840..602205 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  QM317_RS02820 (QM317_02820) yjbH 602228..603034 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  QM317_RS02825 (QM317_02825) pepF 603494..605302 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  QM317_RS02830 (QM317_02830) coiA 605350..606336 (-) 987 WP_000959292.1 competence protein CoiA family protein Machinery gene
  QM317_RS02835 (QM317_02835) mecA 606457..607176 (-) 720 WP_001217728.1 adaptor protein MecA -
  QM317_RS02840 (QM317_02840) spxA 607547..607942 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  QM317_RS02845 (QM317_02845) trpS 608237..609226 (+) 990 WP_000448941.1 tryptophan--tRNA ligase -
  QM317_RS02850 (QM317_02850) opp4C 609268..610149 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  QM317_RS02855 (QM317_02855) opp4B 610161..611123 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=833050 QM317_RS02830 WP_000959292.1 605350..606336(-) (coiA) [Staphylococcus aureus strain 12-03119]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=833050 QM317_RS02830 WP_000959292.1 605350..606336(-) (coiA) [Staphylococcus aureus strain 12-03119]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976