Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   I3F59_RS04790 Genome accession   NZ_CP140097
Coordinates   1091416..1092063 (-) Length   215 a.a.
NCBI ID   WP_279928941.1    Uniprot ID   A0ABT6HNW4
Organism   Streptomyces sp. MUM 178J     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1086416..1097063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3F59_RS04760 (I3F59_004760) - 1086968..1087492 (+) 525 WP_240135767.1 HNH endonuclease -
  I3F59_RS04765 (I3F59_004765) - 1087572..1088531 (-) 960 WP_240135768.1 SPFH domain-containing protein -
  I3F59_RS04770 (I3F59_004770) - 1088620..1089051 (-) 432 WP_240135769.1 NfeD family protein -
  I3F59_RS04775 (I3F59_004775) - 1089164..1089955 (-) 792 WP_240135770.1 ABC transporter ATP-binding protein -
  I3F59_RS04780 (I3F59_004780) - 1090091..1090882 (+) 792 WP_240135771.1 hypothetical protein -
  I3F59_RS04785 (I3F59_004785) - 1090967..1091206 (-) 240 WP_240135772.1 chaplin -
  I3F59_RS04790 (I3F59_004790) vraR 1091416..1092063 (-) 648 WP_279928941.1 response regulator transcription factor Regulator
  I3F59_RS04795 (I3F59_004795) - 1092269..1093420 (-) 1152 WP_240135773.1 GAF domain-containing sensor histidine kinase -
  I3F59_RS04800 (I3F59_004800) - 1093598..1094293 (+) 696 WP_240135774.1 SDR family oxidoreductase -
  I3F59_RS04805 (I3F59_004805) - 1094290..1095405 (+) 1116 WP_240135775.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  I3F59_RS04810 (I3F59_004810) - 1095687..1096436 (+) 750 WP_240135776.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23109.37 Da        Isoelectric Point: 5.3749

>NTDB_id=833036 I3F59_RS04790 WP_279928941.1 1091416..1092063(-) (vraR) [Streptomyces sp. MUM 178J]
MGDGRAIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAGDGAEGVTRAEELKPDVVLMDVKMPGVDGIEALRKLRELGNA
ARVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVADALLSQDDPVNGTGRGSTLTERERE
VLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGLAG

Nucleotide


Download         Length: 648 bp        

>NTDB_id=833036 I3F59_RS04790 WP_279928941.1 1091416..1092063(-) (vraR) [Streptomyces sp. MUM 178J]
GTGGGCGACGGGAGGGCGATCAGAGTCCTGTTGGTCGACGACCACCAGGTGGTCCGCCGGGGCCTGCGGACCTTCCTCGA
GGTCCAGGACGACATCGAGGTCGTCGGCGAGGCCGGCGACGGAGCGGAAGGCGTCACCCGCGCCGAGGAGCTGAAGCCCG
ACGTGGTGCTGATGGACGTCAAGATGCCCGGAGTCGACGGCATCGAGGCGCTGCGCAAGCTCCGCGAGCTCGGCAACGCG
GCCCGGGTGCTCATCGTCACCAGCTTCACCGAGCAGCGCACCGTCGTCCCCGCCTTGCGTGCGGGTGCGTCCGGCTATGT
CTACAAGGACGTCGACCCGGACGCGCTGGCCGGCGCCATCCGCTCCGTGCACGCGGGCCATGTGCTGCTCCAGCCGGAGG
TCGCCGACGCGCTGCTCTCCCAGGACGATCCGGTGAACGGCACGGGCCGCGGAAGCACGCTCACCGAACGTGAGCGGGAG
GTCCTCGGCCTCATCGCCGACGGCCGCTCCAACCGCGAGATCGCCCGGGCGCTGGTGCTGTCCGAGAAGACGGTCAAGAC
GCATGTCTCCAACATCCTGATGAAGCTGGACCTGGCGGACCGCACCCAGGCGGCGCTGTGGGCGGTGCGCCACGGCCTCG
CCGGATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(9-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.914

100

0.4