Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   I3F59_RS03355 Genome accession   NZ_CP140097
Coordinates   770278..770907 (+) Length   209 a.a.
NCBI ID   WP_240140027.1    Uniprot ID   -
Organism   Streptomyces sp. MUM 178J     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 765278..775907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3F59_RS03335 (I3F59_003335) - 766454..767089 (-) 636 WP_330113759.1 vitamin K epoxide reductase family protein -
  I3F59_RS03340 (I3F59_003340) - 767230..768114 (+) 885 WP_240140024.1 ABC transporter ATP-binding protein -
  I3F59_RS03345 (I3F59_003345) - 768111..768971 (+) 861 WP_240140025.1 ABC transporter permease -
  I3F59_RS03350 (I3F59_003350) - 768929..770281 (+) 1353 WP_240140026.1 sensor histidine kinase -
  I3F59_RS03355 (I3F59_003355) vraR 770278..770907 (+) 630 WP_240140027.1 response regulator transcription factor Regulator
  I3F59_RS03360 (I3F59_003360) hisS 771363..772637 (-) 1275 WP_240140028.1 histidine--tRNA ligase -
  I3F59_RS03365 (I3F59_003365) - 772652..773359 (-) 708 WP_240140029.1 MBL fold metallo-hydrolase -
  I3F59_RS03370 (I3F59_003370) - 773538..774338 (+) 801 WP_240140030.1 peptidylprolyl isomerase -
  I3F59_RS03375 (I3F59_003375) - 774516..775745 (+) 1230 WP_240140031.1 DUF349 domain-containing protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22214.54 Da        Isoelectric Point: 4.7673

>NTDB_id=833033 I3F59_RS03355 WP_240140027.1 770278..770907(+) (vraR) [Streptomyces sp. MUM 178J]
MIRILLADDHPVVREGLRGMLGAEPDLEVVAEASSGPEAEALSAELEPDIVLMDLRMPGGGGVESIGRMRAAGLPSRVIV
LTTYETDSDILRAVEAGAAGYLLKDLARTELADAIRAAARGETVLAPSVATRLVDQLRGGRSELPRLSERETAVLRLVAE
GCTNAEIGRRLFIGESTVKTHLLRIFGKLGVDDRTAAVTTALRQGLLPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=833033 I3F59_RS03355 WP_240140027.1 770278..770907(+) (vraR) [Streptomyces sp. MUM 178J]
ATGATCCGCATTCTGCTCGCCGACGACCATCCCGTCGTACGGGAGGGCCTGCGCGGCATGCTCGGCGCGGAACCCGATCT
GGAGGTGGTGGCGGAGGCGTCGAGCGGCCCCGAGGCGGAGGCGCTGAGCGCCGAACTGGAGCCGGACATCGTGCTGATGG
ATCTGCGGATGCCCGGCGGCGGCGGGGTCGAGTCGATCGGCCGGATGCGGGCGGCGGGGCTGCCGTCCCGGGTGATCGTG
CTGACGACGTACGAGACGGATTCCGACATCCTCCGGGCGGTGGAGGCGGGCGCGGCGGGCTATCTGCTCAAGGACCTGGC
CCGTACCGAGCTGGCCGACGCGATCCGCGCGGCGGCACGCGGCGAGACGGTCCTCGCCCCCTCGGTGGCCACCCGCCTGG
TCGACCAGCTCCGCGGCGGCCGGTCCGAGCTCCCGAGGCTCTCGGAACGCGAGACGGCAGTGCTGCGGCTGGTGGCCGAG
GGCTGTACGAACGCGGAGATCGGCCGCCGGTTGTTCATCGGCGAGTCGACGGTCAAGACCCATCTGCTGCGCATCTTCGG
CAAGCTGGGCGTCGACGACCGCACGGCGGCGGTGACGACCGCGCTGCGTCAGGGGCTGCTGCCGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-200)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.67

100

0.407
  degU Bacillus subtilis subsp. subtilis str. 168

36.323

100

0.388