Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   I3F59_RS00755 Genome accession   NZ_CP140097
Coordinates   180951..181628 (-) Length   225 a.a.
NCBI ID   WP_308295515.1    Uniprot ID   -
Organism   Streptomyces sp. MUM 178J     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 175951..186628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3F59_RS00750 (I3F59_000750) - 179597..180802 (+) 1206 WP_240139181.1 transglycosylase family protein -
  I3F59_RS00755 (I3F59_000755) vraR 180951..181628 (-) 678 WP_308295515.1 response regulator transcription factor Regulator
  I3F59_RS00760 (I3F59_000760) - 181625..182932 (-) 1308 WP_240139182.1 histidine kinase -
  I3F59_RS00765 (I3F59_000765) - 183582..184061 (+) 480 WP_240139183.1 hypothetical protein -
  I3F59_RS00770 (I3F59_000770) - 184171..184965 (-) 795 WP_240139184.1 enoyl-CoA hydratase-related protein -
  I3F59_RS00775 (I3F59_000775) - 185058..186359 (-) 1302 WP_240139201.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 23944.70 Da        Isoelectric Point: 4.8382

>NTDB_id=833029 I3F59_RS00755 WP_308295515.1 180951..181628(-) (vraR) [Streptomyces sp. MUM 178J]
MTIRVLVADDQMMVRQGFTVLLNAEEGIEVVGQAVDGLDAVAKTVELAPDVVLMDIRMPRCGGIEATRRIRGGDGDTEGA
PKVLVLTTFDLDEYVYDALRAGASGFLLKDASAAELAGAVRVVAAGEALLAPSVTRRLISEFSRLAGPPRSPLKERIALL
TERETEVLSLIAQGLSNAEIAAQLIVAEQTVKSHVSRILVKLALRDRTQAAVFAYETGLVRPAGP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=833029 I3F59_RS00755 WP_308295515.1 180951..181628(-) (vraR) [Streptomyces sp. MUM 178J]
GTGACGATCCGCGTGCTGGTGGCCGACGATCAGATGATGGTCCGCCAGGGCTTCACCGTGCTGCTCAACGCCGAAGAGGG
CATCGAGGTCGTCGGTCAGGCCGTCGACGGGCTCGACGCCGTCGCCAAGACCGTGGAACTCGCTCCCGACGTCGTGCTGA
TGGACATCCGGATGCCGCGGTGCGGCGGCATCGAGGCCACCCGCCGTATCAGGGGCGGGGACGGAGACACGGAGGGAGCC
CCCAAGGTGCTCGTCCTCACCACTTTCGATCTGGACGAGTATGTGTACGACGCCCTGCGCGCCGGAGCCTCCGGGTTTCT
GCTGAAGGACGCCTCCGCCGCCGAACTCGCAGGTGCCGTGAGGGTGGTGGCGGCCGGAGAGGCACTCCTCGCTCCGAGCG
TCACACGACGACTGATCAGCGAGTTCTCGCGGCTGGCGGGCCCGCCGCGCTCCCCGCTCAAGGAGCGCATCGCCCTTCTG
ACCGAGCGTGAGACGGAGGTCCTGTCCCTGATCGCCCAGGGACTGTCCAATGCGGAGATCGCCGCACAGCTGATCGTGGC
GGAACAGACCGTGAAGTCGCATGTGAGCCGGATTCTGGTCAAACTCGCCCTGCGCGACCGGACGCAGGCGGCGGTCTTCG
CCTACGAGACCGGGCTGGTGCGCCCGGCCGGACCCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-120)

Bacterial regulatory proteins, luxR family (GerE)

(159-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.946

99.111

0.436
  degU Bacillus subtilis subsp. subtilis str. 168

42.174

100

0.431