Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QMY17_RS05925 Genome accession   NZ_CP125812
Coordinates   1124316..1124960 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1119316..1129960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS05895 - 1119667..1120035 (-) 369 WP_014477834.1 hypothetical protein -
  QMY17_RS05900 - 1120149..1120274 (-) 126 WP_003228793.1 hypothetical protein -
  QMY17_RS05905 degQ 1120496..1120636 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QMY17_RS05910 - 1120821..1121684 (+) 864 WP_014480705.1 polyprenyl synthetase family protein -
  QMY17_RS05915 comX 1121686..1121907 (+) 222 WP_014480704.1 competence pheromone ComX -
  QMY17_RS05920 comP 1121923..1124235 (+) 2313 WP_014480703.1 sensor histidine kinase Regulator
  QMY17_RS05925 comA 1124316..1124960 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QMY17_RS05930 yuxO 1124979..1125359 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  QMY17_RS05935 mnhG 1125398..1125772 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  QMY17_RS05940 mrpF 1125756..1126040 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QMY17_RS05945 mrpE 1126040..1126516 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  QMY17_RS05950 mrpD 1126522..1128003 (-) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  QMY17_RS05955 mrpC 1127996..1128337 (-) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  QMY17_RS05960 mrpB 1128337..1128768 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=832923 QMY17_RS05925 WP_003220716.1 1124316..1124960(+) (comA) [Bacillus subtilis strain N3378-3At]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=832923 QMY17_RS05925 WP_003220716.1 1124316..1124960(+) (comA) [Bacillus subtilis strain N3378-3At]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1