Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   U0533_RS12065 Genome accession   NZ_CP139953
Coordinates   2450917..2451654 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Nord1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2445917..2456654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0533_RS12035 (U0533_12035) yfiL 2446076..2446441 (-) 366 WP_019842457.1 DUF2799 domain-containing protein -
  U0533_RS12040 (U0533_12040) aroF 2446650..2447720 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  U0533_RS12045 (U0533_12045) tyrA 2447731..2448852 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  U0533_RS12050 (U0533_12050) pheA 2448895..2450055 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  U0533_RS12055 (U0533_12055) pheL 2450154..2450201 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  U0533_RS12060 (U0533_12060) raiA 2450305..2450646 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  U0533_RS12065 (U0533_12065) comL 2450917..2451654 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  U0533_RS12070 (U0533_12070) rluD 2451789..2452769 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  U0533_RS12075 (U0533_12075) yfiH 2452766..2453497 (+) 732 WP_001551518.1 purine nucleoside phosphorylase YfiH -
  U0533_RS12080 (U0533_12080) clpC 2453627..2456200 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=832875 U0533_RS12065 WP_000197686.1 2450917..2451654(-) (comL) [Escherichia coli strain Nord1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=832875 U0533_RS12065 WP_000197686.1 2450917..2451654(-) (comL) [Escherichia coli strain Nord1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376