Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ULL23_RS22160 Genome accession   NZ_CP139891
Coordinates   4598524..4599933 (+) Length   469 a.a.
NCBI ID   WP_001315107.1    Uniprot ID   A0A0H2Z4V2
Organism   Escherichia coli strain ECO20     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4593524..4604933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ULL23_RS22145 (ULL23_22150) typA 4593684..4595507 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  ULL23_RS22150 (ULL23_22155) glnA 4595880..4597289 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  ULL23_RS22155 (ULL23_22160) glnL 4597463..4598512 (+) 1050 WP_000190574.1 nitrogen regulation protein NR(II) -
  ULL23_RS22160 (ULL23_22165) luxO 4598524..4599933 (+) 1410 WP_001315107.1 nitrogen regulation protein NR(I) Regulator
  ULL23_RS22165 (ULL23_22170) yshB 4600045..4600155 (+) 111 WP_000893994.1 YshB family small membrane protein -
  ULL23_RS22170 (ULL23_22175) hemN 4600388..4601761 (-) 1374 WP_000116096.1 oxygen-independent coproporphyrinogen III oxidase -
  ULL23_RS22175 (ULL23_22180) yihI 4601950..4602459 (-) 510 WP_001295266.1 Der GTPase-activating protein YihI -
  ULL23_RS22180 (ULL23_22185) - 4602578..4602744 (-) 167 Protein_4348 hypothetical protein -
  ULL23_RS22185 (ULL23_22190) yihA 4603041..4603673 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52302.79 Da        Isoelectric Point: 6.5091

>NTDB_id=832732 ULL23_RS22160 WP_001315107.1 4598524..4599933(+) (luxO) [Escherichia coli strain ECO20]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESNVPESTSHMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=832732 ULL23_RS22160 WP_001315107.1 4598524..4599933(+) (luxO) [Escherichia coli strain ECO20]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCATTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGGATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAGTCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
AGCCAAAGCGCCATTTATCGCGCTCAATATGGCGGCTATCCCGAAGGATTTGATCGAATCCGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCTGATGGTGGCACATTATTCCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTACTGGCAGATGGTCAGTTTTATCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCAACCCACCAGAATCTCGAACAGCGGGTGCAGGAAGGCAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCGCTGCGCGAACGTCGGGAAGATATTCCCCGT
CTGGCGCGCCATTTTTTACAGGTTGCCGCGCGAGAGCTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCCGC
GCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTAATGGCTGCCGGAC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAAACGTACCGGAAAGCACTTCACACATGCAGCCGGAC
AGTTGGGCAACGCTGTTAGCACAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAACCTGCTTTCCGAAGCACAGCC
AGAGCTGGAACGGACGTTACTGACCACCGCGCTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTTGGCT
GGGGCCGCAACACCCTGACGCGTAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2Z4V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.655

98.934

0.392
  pilR Pseudomonas aeruginosa PAK

38.854

100

0.39