Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QLQ05_RS05115 Genome accession   NZ_CP125762
Coordinates   997333..997977 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain KRS015     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 992333..1002977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS05085 - 992721..993089 (-) 369 WP_003243784.1 hypothetical protein -
  QLQ05_RS05090 - 993203..993328 (-) 126 WP_003228793.1 hypothetical protein -
  QLQ05_RS05095 degQ 993550..993690 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QLQ05_RS05100 comQ 993875..994774 (+) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  QLQ05_RS05105 comX 994762..994929 (+) 168 WP_003242801.1 competence pheromone ComX Regulator
  QLQ05_RS05110 comP 994944..997252 (+) 2309 Protein_1005 two-component system sensor histidine kinase ComP -
  QLQ05_RS05115 comA 997333..997977 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QLQ05_RS05120 yuxO 997996..998376 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  QLQ05_RS05125 mnhG 998415..998789 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  QLQ05_RS05130 mrpF 998773..999057 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QLQ05_RS05135 mrpE 999057..999533 (-) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  QLQ05_RS05140 mrpD 999539..1001020 (-) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  QLQ05_RS05145 mrpC 1001013..1001354 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  QLQ05_RS05150 mrpB 1001354..1001785 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=832689 QLQ05_RS05115 WP_003220716.1 997333..997977(+) (comA) [Bacillus subtilis strain KRS015]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=832689 QLQ05_RS05115 WP_003220716.1 997333..997977(+) (comA) [Bacillus subtilis strain KRS015]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1