Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QLQ05_RS03175 Genome accession   NZ_CP125762
Coordinates   608936..609658 (+) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain KRS015     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 603936..614658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS03150 degS 604247..605404 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QLQ05_RS03155 degU 605487..606176 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QLQ05_RS03160 fakBA 606274..607119 (+) 846 WP_003244125.1 DegV family protein -
  QLQ05_RS03165 comFA 607225..608616 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  QLQ05_RS03170 comFB 608676..608972 (+) 297 WP_003227989.1 late competence protein ComFB -
  QLQ05_RS03175 comFC 608936..609658 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  QLQ05_RS03180 yvyF 609732..610151 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  QLQ05_RS03185 flgM 610232..610498 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  QLQ05_RS03190 flgN 610514..610996 (+) 483 WP_003227999.1 flagellar protein FlgN -
  QLQ05_RS03195 flgK 611015..612538 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  QLQ05_RS03200 flgL 612549..613445 (+) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  QLQ05_RS03205 yviE 613492..614067 (+) 576 WP_003243053.1 DUF6470 family protein -
  QLQ05_RS03210 fliW 614088..614519 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=832683 QLQ05_RS03175 WP_003227991.1 608936..609658(+) (comFC) [Bacillus subtilis strain KRS015]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=832683 QLQ05_RS03175 WP_003227991.1 608936..609658(+) (comFC) [Bacillus subtilis strain KRS015]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1