Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QLQ05_RS03155 Genome accession   NZ_CP125762
Coordinates   605487..606176 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain KRS015     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 600487..611176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS03135 tagO 601053..602129 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  QLQ05_RS03140 tagV 602202..603377 (-) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  QLQ05_RS03145 yvyE 603377..604030 (-) 654 WP_003227979.1 YigZ family protein -
  QLQ05_RS03150 degS 604247..605404 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QLQ05_RS03155 degU 605487..606176 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QLQ05_RS03160 fakBA 606274..607119 (+) 846 WP_003244125.1 DegV family protein -
  QLQ05_RS03165 comFA 607225..608616 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  QLQ05_RS03170 comFB 608676..608972 (+) 297 WP_003227989.1 late competence protein ComFB -
  QLQ05_RS03175 comFC 608936..609658 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  QLQ05_RS03180 yvyF 609732..610151 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  QLQ05_RS03185 flgM 610232..610498 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  QLQ05_RS03190 flgN 610514..610996 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=832681 QLQ05_RS03155 WP_003219701.1 605487..606176(+) (degU) [Bacillus subtilis strain KRS015]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=832681 QLQ05_RS03155 WP_003219701.1 605487..606176(+) (degU) [Bacillus subtilis strain KRS015]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1