Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   QMZ12_RS02315 Genome accession   NZ_CP125738
Coordinates   426715..427365 (+) Length   216 a.a.
NCBI ID   WP_002886738.1    Uniprot ID   A0AB36G702
Organism   Campylobacter jejuni strain MS2217     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 421715..432365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ12_RS02295 (QMZ12_02290) - 422589..424031 (-) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -
  QMZ12_RS02300 (QMZ12_02295) fbaA 424126..425190 (-) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  QMZ12_RS02305 (QMZ12_02300) peb4 425190..426011 (-) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  QMZ12_RS02310 (QMZ12_02305) nth 426092..426718 (+) 627 WP_002852225.1 endonuclease III -
  QMZ12_RS02315 (QMZ12_02310) CJE0566 426715..427365 (+) 651 WP_002886738.1 DNA/RNA non-specific endonuclease Regulator
  QMZ12_RS02320 (QMZ12_02315) - 427376..428008 (+) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  QMZ12_RS02325 (QMZ12_02320) - 428066..428500 (+) 435 WP_002870071.1 EexN family lipoprotein -
  QMZ12_RS02330 (QMZ12_02325) - 428497..428718 (+) 222 WP_079394623.1 EexN family lipoprotein -
  QMZ12_RS02335 (QMZ12_02330) cmoA 428708..429418 (-) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  QMZ12_RS02340 (QMZ12_02335) ribF 429405..430259 (-) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  QMZ12_RS02345 (QMZ12_02340) tlyA 430225..430986 (-) 762 WP_002870073.1 TlyA family RNA methyltransferase -
  QMZ12_RS02350 (QMZ12_02345) - 430983..431987 (-) 1005 WP_011049741.1 membrane protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.13 Da        Isoelectric Point: 9.6573

>NTDB_id=832593 QMZ12_RS02315 WP_002886738.1 426715..427365(+) (CJE0566) [Campylobacter jejuni strain MS2217]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKSRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=832593 QMZ12_RS02315 WP_002886738.1 426715..427365(+) (CJE0566) [Campylobacter jejuni strain MS2217]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAGCCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63