Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | QMO63_RS25695 | Genome accession | NZ_CP125729 |
| Coordinates | 5529254..5530126 (+) | Length | 290 a.a. |
| NCBI ID | WP_019726811.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain SHPHC59 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5524254..5535126
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMO63_RS25670 (QMO63_25645) | nadC | 5524625..5525473 (+) | 849 | WP_003116246.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QMO63_RS25680 (QMO63_25655) | - | 5525626..5526099 (-) | 474 | WP_015503553.1 | pilin | - |
| QMO63_RS25685 (QMO63_25660) | pilB | 5526330..5528030 (+) | 1701 | WP_003120945.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QMO63_RS25690 (QMO63_25665) | pilC | 5528034..5529251 (+) | 1218 | WP_010792214.1 | type II secretion system F family protein | Machinery gene |
| QMO63_RS25695 (QMO63_25670) | pilD | 5529254..5530126 (+) | 873 | WP_019726811.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| QMO63_RS25700 (QMO63_25675) | coaE | 5530123..5530734 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| QMO63_RS25705 (QMO63_25680) | yacG | 5530731..5530931 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| QMO63_RS25710 (QMO63_25685) | - | 5530968..5531177 (-) | 210 | WP_003120946.1 | hypothetical protein | - |
| QMO63_RS25715 (QMO63_25690) | - | 5531283..5531972 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| QMO63_RS25720 (QMO63_25695) | - | 5531969..5532439 (-) | 471 | WP_019486073.1 | hypothetical protein | - |
| QMO63_RS25725 (QMO63_25700) | - | 5532436..5532861 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| QMO63_RS25730 (QMO63_25705) | - | 5532994..5533623 (+) | 630 | WP_003120948.1 | DUF1780 domain-containing protein | - |
| QMO63_RS25735 (QMO63_25710) | - | 5533620..5534069 (+) | 450 | WP_003161439.1 | MOSC domain-containing protein | - |
| QMO63_RS25740 (QMO63_25715) | - | 5534095..5534265 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31862.88 Da Isoelectric Point: 7.2974
>NTDB_id=832505 QMO63_RS25695 WP_019726811.1 5529254..5530126(+) (pilD) [Pseudomonas aeruginosa strain SHPHC59]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWQFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWQFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=832505 QMO63_RS25695 WP_019726811.1 5529254..5530126(+) (pilD) [Pseudomonas aeruginosa strain SHPHC59]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCAATTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCAATTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.671 |
99.655 |
0.545 |
| pilD | Vibrio campbellii strain DS40M4 |
53.147 |
98.621 |
0.524 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.64 |
95.862 |
0.476 |