Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   QMO72_RS09450 Genome accession   NZ_CP125718
Coordinates   1956951..1957514 (-) Length   187 a.a.
NCBI ID   WP_103266739.1    Uniprot ID   -
Organism   Staphylococcus casei strain DSM 15096     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1951951..1962514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO72_RS09415 (QMO72_09415) - 1952252..1953604 (-) 1353 WP_103266744.1 isochorismate synthase -
  QMO72_RS09420 (QMO72_09420) - 1953785..1954723 (+) 939 WP_103266743.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  QMO72_RS09425 (QMO72_09425) - 1954814..1955380 (-) 567 WP_103266742.1 GNAT family N-acetyltransferase -
  QMO72_RS09430 (QMO72_09430) - 1955547..1955759 (+) 213 WP_046838117.1 NINE protein -
  QMO72_RS09435 (QMO72_09435) - 1956182..1956379 (-) 198 WP_103266740.1 hypothetical protein -
  QMO72_RS09450 (QMO72_09450) comK/comK1 1956951..1957514 (-) 564 WP_103266739.1 competence protein ComK Regulator
  QMO72_RS09455 (QMO72_09455) - 1957768..1957986 (+) 219 WP_046838109.1 IDEAL domain-containing protein -
  QMO72_RS09460 (QMO72_09460) - 1958086..1959075 (-) 990 WP_103266737.1 lipoate--protein ligase -
  QMO72_RS09465 (QMO72_09465) - 1959277..1959462 (+) 186 WP_046838107.1 DUF2187 family protein -
  QMO72_RS09470 (QMO72_09470) - 1959468..1960070 (+) 603 WP_103266736.1 CPBP family glutamic-type intramembrane protease -
  QMO72_RS09475 (QMO72_09475) - 1960240..1961748 (-) 1509 WP_103266734.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21999.28 Da        Isoelectric Point: 9.2503

>NTDB_id=832476 QMO72_RS09450 WP_103266739.1 1956951..1957514(-) (comK/comK1) [Staphylococcus casei strain DSM 15096]
MIQQYIIKKGDMALQPCNLSIGQYEGTSIYKYKEESNVIKDRIHKIIDRSCKFYGSSYVFKKEDTMRITGICSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVQSIRTLKDKKSKVTFVDNQSIIVNISAHSMQHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKSQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=832476 QMO72_RS09450 WP_103266739.1 1956951..1957514(-) (comK/comK1) [Staphylococcus casei strain DSM 15096]
ATGATTCAACAATACATTATTAAAAAAGGTGATATGGCGCTTCAACCATGTAATTTGTCAATTGGACAGTATGAAGGTAC
ATCTATCTACAAGTACAAAGAAGAAAGTAATGTCATAAAAGATCGAATACATAAAATTATCGACCGTTCATGCAAGTTCT
ACGGTAGTAGTTATGTATTTAAAAAAGAAGATACTATGAGAATCACTGGTATTTGCAGTAAACCACCTATTTTATTCACC
CCGTTATTTCCTACTTATTTCTTTCCAACCCATTCAGACCGTAAAGAAGAAAACACTTGGATCAACATTCATTATGTTCA
GAGTATTAGAACGTTAAAAGATAAAAAATCTAAAGTGACTTTCGTAGATAATCAGTCTATTATTGTTAATATTTCAGCAC
ATAGTATGCAACATCAATACTTAAACGGTATATACTATTATTATATGATGGATAGAGCAGCTAGAGTTGCTACATTTGAT
CCCGAATCTCCTATTGATTATACGAAATCACAATTAAATATTTACGAAGCTTTGGCCAAATACTCTTTATTTGAAAGTAA
GTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

54.645

97.861

0.535
  comK/comK1 Staphylococcus aureus N315

54.645

97.861

0.535