Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QMO72_RS08380 Genome accession   NZ_CP125718
Coordinates   1733029..1733898 (-) Length   289 a.a.
NCBI ID   WP_103266803.1    Uniprot ID   -
Organism   Staphylococcus casei strain DSM 15096     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1701171..1767678 1733029..1733898 within 0


Gene organization within MGE regions


Location: 1701171..1767678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO72_RS08250 (QMO72_08250) rpsO 1701512..1701781 (-) 270 WP_046836268.1 30S ribosomal protein S15 -
  QMO72_RS08255 (QMO72_08255) - 1701885..1702856 (-) 972 WP_103266948.1 bifunctional riboflavin kinase/FAD synthetase -
  QMO72_RS08260 (QMO72_08260) truB 1702870..1703787 (-) 918 WP_103266950.1 tRNA pseudouridine(55) synthase TruB -
  QMO72_RS08265 (QMO72_08265) rbfA 1703919..1704263 (-) 345 WP_046836265.1 30S ribosome-binding factor RbfA -
  QMO72_RS08270 (QMO72_08270) - 1704705..1705577 (+) 873 WP_103266951.1 HTH domain-containing protein -
  QMO72_RS08275 (QMO72_08275) - 1705673..1706665 (-) 993 WP_286093170.1 hypothetical protein -
  QMO72_RS08280 (QMO72_08280) infB 1707585..1709708 (-) 2124 WP_103266786.1 translation initiation factor IF-2 -
  QMO72_RS08285 (QMO72_08285) - 1709713..1710030 (-) 318 WP_046836261.1 ribosomal L7Ae/L30e/S12e/Gadd45 family protein -
  QMO72_RS08290 (QMO72_08290) - 1710027..1710311 (-) 285 WP_046836260.1 YlxR family protein -
  QMO72_RS08295 (QMO72_08295) nusA 1710329..1711525 (-) 1197 WP_103266787.1 transcription termination factor NusA -
  QMO72_RS08300 (QMO72_08300) rimP 1711546..1712013 (-) 468 WP_046836258.1 ribosome maturation factor RimP -
  QMO72_RS08305 (QMO72_08305) - 1712247..1716563 (-) 4317 WP_103266788.1 PolC-type DNA polymerase III -
  QMO72_RS08310 (QMO72_08310) - 1716836..1718536 (-) 1701 WP_103266789.1 proline--tRNA ligase -
  QMO72_RS08315 (QMO72_08315) rseP 1718557..1719843 (-) 1287 WP_103266790.1 RIP metalloprotease RseP -
  QMO72_RS08320 (QMO72_08320) - 1720160..1720942 (-) 783 WP_069824238.1 phosphatidate cytidylyltransferase -
  QMO72_RS08325 (QMO72_08325) - 1720960..1721724 (-) 765 WP_069824239.1 isoprenyl transferase -
  QMO72_RS08330 (QMO72_08330) frr 1721958..1722512 (-) 555 WP_103266791.1 ribosome recycling factor -
  QMO72_RS08335 (QMO72_08335) pyrH 1722529..1723251 (-) 723 WP_103266793.1 UMP kinase -
  QMO72_RS08340 (QMO72_08340) tsf 1723385..1724263 (-) 879 WP_103266795.1 translation elongation factor Ts -
  QMO72_RS08345 (QMO72_08345) rpsB 1724358..1725146 (-) 789 WP_046836249.1 30S ribosomal protein S2 -
  QMO72_RS08350 (QMO72_08350) codY 1725400..1726173 (-) 774 WP_069824241.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  QMO72_RS08355 (QMO72_08355) hslU 1726198..1727607 (-) 1410 WP_103266797.1 ATP-dependent protease ATPase subunit HslU -
  QMO72_RS08360 (QMO72_08360) hslV 1727737..1728282 (-) 546 WP_176721598.1 ATP-dependent protease subunit HslV -
  QMO72_RS08365 (QMO72_08365) xerC 1728283..1729173 (-) 891 WP_103266799.1 tyrosine recombinase XerC -
  QMO72_RS08370 (QMO72_08370) trmFO 1729292..1730599 (-) 1308 WP_103266800.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QMO72_RS08375 (QMO72_08375) topA 1730755..1732821 (-) 2067 WP_103266801.1 type I DNA topoisomerase -
  QMO72_RS08380 (QMO72_08380) dprA 1733029..1733898 (-) 870 WP_103266803.1 DNA-processing protein DprA Machinery gene
  QMO72_RS08385 (QMO72_08385) sucD 1734247..1735155 (-) 909 WP_103267731.1 succinate--CoA ligase subunit alpha -
  QMO72_RS08390 (QMO72_08390) sucC 1735177..1736343 (-) 1167 WP_073504606.1 ADP-forming succinate--CoA ligase subunit beta -
  QMO72_RS08395 (QMO72_08395) - 1736451..1737221 (-) 771 WP_103267730.1 ribonuclease HII -
  QMO72_RS08400 (QMO72_08400) ylqF 1737230..1738090 (-) 861 WP_103267729.1 ribosome biogenesis GTPase YlqF -
  QMO72_RS08405 (QMO72_08405) - 1738492..1741071 (+) 2580 WP_103267840.1 YfhO family protein -
  QMO72_RS08410 (QMO72_08410) - 1741122..1743746 (+) 2625 WP_103267841.1 YfhO family protein -
  QMO72_RS08415 (QMO72_08415) rplS 1743925..1744275 (-) 351 WP_046836235.1 50S ribosomal protein L19 -
  QMO72_RS08420 (QMO72_08420) trmD 1744377..1745114 (-) 738 WP_103267842.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QMO72_RS08425 (QMO72_08425) rimM 1745114..1745620 (-) 507 WP_069824253.1 ribosome maturation factor RimM -
  QMO72_RS08430 (QMO72_08430) rpsP 1745890..1746156 (-) 267 WP_069824254.1 30S ribosomal protein S16 -
  QMO72_RS08435 (QMO72_08435) - 1746693..1747445 (+) 753 WP_103267843.1 3-oxoacyl-ACP reductase -
  QMO72_RS08440 (QMO72_08440) - 1747473..1748780 (+) 1308 WP_103267844.1 LLM class flavin-dependent oxidoreductase -
  QMO72_RS08445 (QMO72_08445) ffh 1748891..1750258 (-) 1368 WP_069824257.1 signal recognition particle protein -
  QMO72_RS08450 (QMO72_08450) - 1750284..1750616 (-) 333 WP_046836228.1 putative DNA-binding protein -
  QMO72_RS08455 (QMO72_08455) ftsY 1750603..1751820 (-) 1218 WP_103267845.1 signal recognition particle-docking protein FtsY -
  QMO72_RS08460 (QMO72_08460) smc 1751817..1755386 (-) 3570 WP_103267846.1 chromosome segregation protein SMC -
  QMO72_RS08465 (QMO72_08465) rnc 1755468..1756202 (-) 735 WP_103267847.1 ribonuclease III -
  QMO72_RS08470 (QMO72_08470) - 1756434..1756667 (-) 234 WP_046836224.1 acyl carrier protein -
  QMO72_RS08475 (QMO72_08475) fabG 1756917..1757651 (-) 735 WP_103267848.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QMO72_RS08480 (QMO72_08480) fabD 1757644..1758570 (-) 927 WP_103267849.1 ACP S-malonyltransferase -
  QMO72_RS08485 (QMO72_08485) plsX 1758563..1759549 (-) 987 WP_103267850.1 phosphate acyltransferase PlsX -
  QMO72_RS08490 (QMO72_08490) fapR 1759542..1760111 (-) 570 WP_069824264.1 transcription factor FapR -
  QMO72_RS08495 (QMO72_08495) - 1760441..1762015 (+) 1575 WP_103267640.1 M4 family metallopeptidase -
  QMO72_RS08500 (QMO72_08500) recG 1762177..1764222 (-) 2046 WP_103267639.1 ATP-dependent DNA helicase RecG -
  QMO72_RS08505 (QMO72_08505) sdaAA 1764225..1765094 (-) 870 WP_046836217.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  QMO72_RS08510 (QMO72_08510) sdaAB 1765109..1765774 (-) 666 WP_069824267.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 33636.95 Da        Isoelectric Point: 9.6299

>NTDB_id=832475 QMO72_RS08380 WP_103266803.1 1733029..1733898(-) (dprA) [Staphylococcus casei strain DSM 15096]
MKEYQFLKLRFSGLTTQQIRQFLKGYPYFLECNKIEQHDLLKQFLSILNVRRKTHIYNQFVNYNVEQILLQMQQWRVDYI
PITHPHYPQLLREIYDPPYILFYKGNISLLQSPHTLAVIGSRNATQYTDKALCYLFPSFKKVNMTIVSGLAKGADYKAHR
YALSMDIPSIAVLGFGHLYHYPKETQKIRNQLEVEGLVISEYLPNQTPQKYYFPERNRLISGLSKGILITESKSMSGTRI
TTHCALEQNREVYVLPGSMFNELTRGNLLSAQEGAKIVLRPSDIINDFL

Nucleotide


Download         Length: 870 bp        

>NTDB_id=832475 QMO72_RS08380 WP_103266803.1 1733029..1733898(-) (dprA) [Staphylococcus casei strain DSM 15096]
ATGAAAGAATACCAATTTTTAAAACTACGTTTTTCTGGATTGACTACACAGCAAATAAGACAATTTTTAAAAGGTTATCC
TTATTTCTTAGAGTGTAATAAAATTGAACAACATGATTTACTCAAACAGTTTTTATCTATTTTAAATGTTAGACGTAAAA
CGCATATATATAATCAATTTGTAAATTACAATGTTGAACAAATCTTATTACAAATGCAACAGTGGCGTGTAGATTATATA
CCAATTACACATCCTCATTACCCTCAATTGCTACGGGAAATTTACGACCCTCCATATATACTTTTCTACAAAGGAAATAT
ATCTTTATTACAATCACCACACACATTGGCAGTTATTGGTTCAAGAAATGCTACTCAATATACAGATAAAGCATTATGCT
ATCTTTTTCCTTCATTTAAAAAAGTGAACATGACAATTGTTTCAGGTTTAGCTAAAGGTGCTGACTATAAGGCACACCGA
TATGCGTTAAGTATGGATATACCTTCTATTGCTGTGCTAGGTTTTGGACATTTGTATCATTATCCTAAAGAAACACAAAA
GATTAGAAATCAACTTGAAGTTGAAGGGCTAGTGATAAGCGAATACTTACCAAATCAAACGCCACAAAAATATTATTTTC
CTGAACGAAATAGATTAATTAGTGGATTATCCAAAGGCATATTAATTACAGAATCTAAGTCAATGAGTGGCACACGTATT
ACGACTCATTGCGCCTTAGAACAAAATAGAGAAGTATATGTTTTGCCAGGATCTATGTTTAATGAATTGACTAGGGGTAA
TTTATTGAGTGCACAAGAAGGTGCGAAAATTGTTTTGAGACCAAGTGATATTATAAATGACTTTCTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

49.65

98.962

0.491
  dprA Staphylococcus aureus N315

49.477

99.308

0.491