Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMO72_RS04165 Genome accession   NZ_CP125718
Coordinates   899798..900217 (+) Length   139 a.a.
NCBI ID   WP_103266263.1    Uniprot ID   -
Organism   Staphylococcus casei strain DSM 15096     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 894798..905217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO72_RS04135 (QMO72_04135) atpD 894946..896358 (+) 1413 WP_046837799.1 F0F1 ATP synthase subunit beta -
  QMO72_RS04140 (QMO72_04140) - 896378..896782 (+) 405 WP_103266262.1 F0F1 ATP synthase subunit epsilon -
  QMO72_RS04145 (QMO72_04145) - 897011..897244 (+) 234 WP_069823673.1 DUF1146 family protein -
  QMO72_RS04150 (QMO72_04150) murA 897346..898611 (+) 1266 WP_069823674.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QMO72_RS04155 (QMO72_04155) fabZ 898669..899106 (+) 438 WP_069823675.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QMO72_RS04160 (QMO72_04160) - 899165..899608 (-) 444 WP_069823676.1 YwpF-like family protein -
  QMO72_RS04165 (QMO72_04165) ssb 899798..900217 (+) 420 WP_103266263.1 single-stranded DNA-binding protein Machinery gene
  QMO72_RS04170 (QMO72_04170) - 900694..901362 (+) 669 WP_069823753.1 transglycosylase family protein -
  QMO72_RS04175 (QMO72_04175) tenA 901685..902374 (+) 690 WP_103266264.1 thiaminase II -
  QMO72_RS04180 (QMO72_04180) thiD 902367..903188 (+) 822 WP_103266265.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QMO72_RS04185 (QMO72_04185) thiM 903178..903969 (+) 792 WP_103266266.1 hydroxyethylthiazole kinase -
  QMO72_RS04190 (QMO72_04190) thiE 903973..904611 (+) 639 WP_103266267.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15880.15 Da        Isoelectric Point: 6.2337

>NTDB_id=832457 QMO72_RS04165 WP_103266263.1 899798..900217(+) (ssb) [Staphylococcus casei strain DSM 15096]
MINNIVVVGRLTKAPKIFEKEGSKLATFCVAVTRNYKDKHQNTICDYLYCKAFGKIASNIEKYINQGSLVGITGQMQSRK
FTKEGQTHFVSEIYIETIKFMSPQSKVETEAVFEPFQLEPNHESLDEITVQETDIYETV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=832457 QMO72_RS04165 WP_103266263.1 899798..900217(+) (ssb) [Staphylococcus casei strain DSM 15096]
ATGATAAATAATATCGTCGTTGTAGGACGACTTACGAAAGCTCCAAAAATATTTGAAAAGGAGGGCAGTAAATTAGCTAC
ATTTTGTGTAGCAGTTACTAGAAACTATAAAGATAAGCATCAAAATACAATTTGTGACTATTTATACTGTAAAGCATTTG
GAAAGATAGCCAGTAATATTGAAAAATATATTAATCAAGGTTCACTGGTAGGTATTACAGGACAAATGCAATCACGTAAA
TTTACAAAAGAAGGACAGACGCACTTTGTATCAGAAATTTATATTGAAACTATCAAATTTATGTCTCCACAATCAAAAGT
TGAAACAGAAGCGGTATTTGAGCCATTCCAACTAGAACCCAACCATGAGTCATTAGATGAAATAACTGTACAAGAAACCG
ATATATATGAAACTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

71.698

76.259

0.547
  ssb Staphylococcus aureus MW2

70.755

76.259

0.54