Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   QMO72_RS00195 Genome accession   NZ_CP125718
Coordinates   45385..46734 (-) Length   449 a.a.
NCBI ID   WP_103266534.1    Uniprot ID   -
Organism   Staphylococcus casei strain DSM 15096     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 40385..51734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO72_RS00165 (QMO72_00165) - 41357..41578 (-) 222 WP_103266530.1 hypothetical protein -
  QMO72_RS00170 (QMO72_00170) - 41593..42099 (-) 507 WP_031797623.1 DUF1643 domain-containing protein -
  QMO72_RS00175 (QMO72_00175) - 42113..42424 (-) 312 WP_011302036.1 DUF960 family protein -
  QMO72_RS00180 (QMO72_00180) - 42520..42858 (-) 339 WP_011302037.1 SAUGI family uracil-DNA glycosylase inhibitor -
  QMO72_RS00185 (QMO72_00185) - 43414..43701 (+) 288 WP_103266532.1 hypothetical protein -
  QMO72_RS00190 (QMO72_00190) ccrB 43737..45365 (-) 1629 WP_103266533.1 recombinase family protein Machinery gene
  QMO72_RS00195 (QMO72_00195) ccrA 45385..46734 (-) 1350 WP_103266534.1 recombinase family protein Machinery gene
  QMO72_RS00200 (QMO72_00200) - 46905..47168 (-) 264 WP_047505043.1 hypothetical protein -
  QMO72_RS00205 (QMO72_00205) - 47234..49024 (-) 1791 WP_103266535.1 DUF927 domain-containing protein -
  QMO72_RS00210 (QMO72_00210) - 49024..49317 (-) 294 WP_002511823.1 DUF1413 domain-containing protein -
  QMO72_RS00215 (QMO72_00215) - 49497..50492 (-) 996 WP_002511822.1 hypothetical protein -
  QMO72_RS00220 (QMO72_00220) - 51039..51371 (-) 333 WP_286093211.1 TetR-like C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52005.86 Da        Isoelectric Point: 10.1420

>NTDB_id=832453 QMO72_RS00195 WP_103266534.1 45385..46734(-) (ccrA) [Staphylococcus casei strain DSM 15096]
MKQAIGYLRQSTLKQQSLSAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLIKLCQQYNVDILSVNDGYFDLNKSFDRLKLNIFISLAELESNNIGEQVSNGIKEKARQGKLITTHAPFGYHYY
KGTFVINPVEAQTVTAVFKYYLQGYGYKKIAQYLEKDNKLINRKPYQVRNIIMNPNYCGRVNNKYGTFDNMFPFIISKSV
YKDAQAIRVNKQVQRTPSANLLKQKIKCPCCDSTLTNMTIRKKEHTLRYYVCPKNMNESRFVCSFKGINAQELEVQVLAT
CQNFFQNQQLYSKINNTIHQRLKKQRVIEAKSTLTQEQLIDKLAKGMIDAESFRKQTHSMNQKHKTISSISDNQLQTSLQ
NVIQQSFTLNMLYPHIDEIHITKNKALVGIYFKNEPLNIVNQTSQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=832453 QMO72_RS00195 WP_103266534.1 45385..46734(-) (ccrA) [Staphylococcus casei strain DSM 15096]
ATGAAACAAGCAATAGGTTATCTACGTCAAAGTACACTCAAACAACAATCACTCTCAGCCCAGAAACAAACCATCAAGGC
ATTAGCCGAAAAGCATAATATTCAACACATTACCTTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGAAACGGTT
ACCAGCAAATTACTGAACTGATTCAACAAGGACAATGTGACGTACTATGTTGTTATCGTCTGAATCGACTTCATCGTAAT
TTGAAAAATGCGCTAAAATTAATTAAATTATGCCAGCAGTACAATGTAGATATCTTGAGTGTTAACGATGGCTATTTTGA
CTTAAACAAATCATTTGATCGTCTAAAACTCAATATCTTCATTTCATTAGCTGAACTTGAGTCAAATAATATTGGTGAAC
AAGTAAGCAACGGGATAAAAGAAAAAGCACGTCAAGGTAAACTGATTACCACACATGCACCTTTTGGATATCATTATTAT
AAAGGCACATTTGTAATCAACCCAGTAGAAGCACAAACGGTGACTGCAGTATTCAAATACTATCTTCAAGGGTATGGTTA
CAAAAAGATTGCACAATATTTGGAAAAAGATAATAAGTTAATCAACCGAAAACCATATCAAGTACGTAACATTATTATGA
ACCCTAATTACTGTGGACGTGTGAATAACAAATACGGCACCTTTGATAATATGTTCCCATTTATTATCAGTAAATCAGTG
TATAAAGATGCTCAAGCAATACGAGTAAATAAACAAGTTCAGCGCACGCCTTCTGCTAATTTACTCAAACAAAAGATCAA
ATGTCCTTGTTGTGACTCAACGCTGACAAATATGACGATAAGAAAAAAAGAACATACATTGCGATATTATGTTTGTCCTA
AAAATATGAATGAATCTCGCTTTGTCTGTTCATTCAAAGGGATAAATGCACAAGAATTAGAAGTTCAAGTCTTAGCAACA
TGTCAGAACTTCTTTCAAAACCAACAGCTCTATTCAAAAATTAATAATACGATTCATCAACGCCTCAAAAAACAAAGAGT
GATAGAAGCTAAAAGTACGCTAACTCAAGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAATCATTCA
GAAAACAGACTCATTCGATGAATCAAAAGCACAAAACCATATCCTCCATAAGTGATAATCAGTTACAAACATCACTACAA
AATGTGATACAGCAAAGTTTCACGTTAAACATGCTGTATCCCCATATTGATGAAATTCATATTACTAAAAACAAAGCCCT
TGTTGGGATCTATTTCAAAAATGAACCATTGAATATTGTGAACCAAACCTCGCAATCATCGATTGCCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(168-248)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(261-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

78.174

100

0.782
  ccrA Staphylococcus aureus N315

71.492

100

0.715