Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   QMO72_RS00190 Genome accession   NZ_CP125718
Coordinates   43737..45365 (-) Length   542 a.a.
NCBI ID   WP_103266533.1    Uniprot ID   -
Organism   Staphylococcus casei strain DSM 15096     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38737..50365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO72_RS00160 (QMO72_00160) - 39430..41217 (-) 1788 WP_103266528.1 class I SAM-dependent DNA methyltransferase -
  QMO72_RS00165 (QMO72_00165) - 41357..41578 (-) 222 WP_103266530.1 hypothetical protein -
  QMO72_RS00170 (QMO72_00170) - 41593..42099 (-) 507 WP_031797623.1 DUF1643 domain-containing protein -
  QMO72_RS00175 (QMO72_00175) - 42113..42424 (-) 312 WP_011302036.1 DUF960 family protein -
  QMO72_RS00180 (QMO72_00180) - 42520..42858 (-) 339 WP_011302037.1 SAUGI family uracil-DNA glycosylase inhibitor -
  QMO72_RS00185 (QMO72_00185) - 43414..43701 (+) 288 WP_103266532.1 hypothetical protein -
  QMO72_RS00190 (QMO72_00190) ccrB 43737..45365 (-) 1629 WP_103266533.1 recombinase family protein Machinery gene
  QMO72_RS00195 (QMO72_00195) ccrA 45385..46734 (-) 1350 WP_103266534.1 recombinase family protein Machinery gene
  QMO72_RS00200 (QMO72_00200) - 46905..47168 (-) 264 WP_047505043.1 hypothetical protein -
  QMO72_RS00205 (QMO72_00205) - 47234..49024 (-) 1791 WP_103266535.1 DUF927 domain-containing protein -
  QMO72_RS00210 (QMO72_00210) - 49024..49317 (-) 294 WP_002511823.1 DUF1413 domain-containing protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62669.48 Da        Isoelectric Point: 9.7154

>NTDB_id=832452 QMO72_RS00190 WP_103266533.1 43737..45365(-) (ccrB) [Staphylococcus casei strain DSM 15096]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCDFNNFAVVDVYADRGISGKSMNRPELQRLLKDANEGQIDSVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYEKIPDNKHELMINQHEANIVKYIFESYAKGHGYRRIANALNHKGYVTKKNKPFSIGSVTYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDNPVIADGKHSPIISQELWDKVQARKKQVSKKPQVHGKGTNILTGLISCPQCSASMSASTTVNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQEHQIDTSALNHDIAYKQQQYD
EVQIKLDNLIKTLEDNPDLTSVLKNTIHQYEKQLNDITTQINQLKQQQNQEKPSYDTKQIAALLQRIFQNIEFMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNTQLDEVLLSTSSLFLPQTLYLKI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=832452 QMO72_RS00190 WP_103266533.1 43737..45365(-) (ccrB) [Staphylococcus casei strain DSM 15096]
ATGCAACAACTTAAACAAAAACGTGTCGGTATCTATGTCCGTGTATCAACAGAAATGCAAAGTACTGAAGGATATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGCTGTTGTAGATGTATACGCGGATAGAGGTA
TCTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGCCAGATCGATTCTGTTATG
GTCTACAAAACAAACCGGCTAGCACGTAACACTTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTTAATACAAGCAGTGGTAAACTGATGCTACAAATTCTAGCGAGTTTTTCAG
AATTTGAAAGAAATAATATTGTCGAAAATGTATTCATGGGTCAAACCCGACGCGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCATTAGGCTATGAGAAAATACCAGATAATAAGCATGAACTCATGATTAATCAACATGAAGCCAATATCGTTAAATA
CATCTTTGAATCATATGCTAAAGGCCATGGATATCGTAGAATTGCCAATGCACTCAACCATAAAGGTTATGTCACTAAAA
AAAATAAACCATTCAGTATTGGTTCAGTGACCTATATCTTATCCAATCCGTTCTATATTGGTAAAATTCAATTTGCAAAA
TACAAAGATTGGAATGACAAACGTCGTAAGGGATTAAATGATAATCCAGTAATTGCTGATGGAAAGCACTCCCCTATCAT
TAGTCAAGAGCTGTGGGATAAAGTACAAGCTCGTAAGAAGCAAGTCAGCAAAAAACCACAAGTTCATGGTAAAGGGACAA
ATATTTTAACTGGGTTAATTTCGTGTCCCCAATGTTCTGCTTCAATGTCTGCGAGCACAACAGTTAATACACTTAAAGAT
GGTACTAAAAAACGCATTCGCTACTATTCGTGTAGTAACTTTCGTAATAAAGGGTCAAAAGTATGTTCTGCGAATAGTGT
CAGAGCCGATGTAATTGAAAAATATGTTATGGATCAAATACTCGAAATTGTTAAAAGCGACAAGGTTATCAAGCAAGTCG
TTGAGCGTGTCAATCAAGAACATCAAATTGATACGTCTGCACTCAATCATGATATCGCATATAAGCAACAACAATATGAT
GAGGTCCAAATCAAATTAGATAACTTGATAAAAACGCTTGAAGATAATCCAGACTTAACATCTGTGCTTAAAAATACGAT
TCATCAGTATGAAAAACAACTCAATGACATCACAACTCAAATCAATCAACTTAAGCAACAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATTCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGATGAGAATCATAAAAAGCAATTCTATGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATACTCAGCTCGACGAAGTGCTTCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACTCTTTACCTTAAAATCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(302-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

85.424

100

0.854