Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   U0450_RS05345 Genome accession   NZ_CP139863
Coordinates   1065100..1066197 (-) Length   365 a.a.
NCBI ID   WP_000266667.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P2112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1060100..1071197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0450_RS05330 - 1060566..1062188 (-) 1623 WP_000958760.1 ATP-binding cassette domain-containing protein -
  U0450_RS05335 trpS 1062394..1063419 (+) 1026 WP_000165444.1 tryptophan--tRNA ligase -
  U0450_RS05340 guaB 1063571..1065049 (+) 1479 WP_000073428.1 IMP dehydrogenase -
  U0450_RS05345 recF 1065100..1066197 (-) 1098 WP_000266667.1 DNA replication/repair protein RecF Machinery gene
  U0450_RS05350 yaaA 1066200..1066568 (-) 369 WP_000455903.1 S4 domain-containing protein YaaA -
  U0450_RS05355 yfmF 1066727..1067977 (+) 1251 WP_000424271.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  U0450_RS05360 yfmH 1067974..1069257 (+) 1284 WP_000170215.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  U0450_RS05365 rodZ 1069299..1070120 (+) 822 WP_001227958.1 cytoskeleton protein RodZ -
  U0450_RS05370 pgsA 1070131..1070676 (+) 546 WP_000712132.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41944.01 Da        Isoelectric Point: 8.6746

>NTDB_id=832434 U0450_RS05345 WP_000266667.1 1065100..1066197(-) (recF) [Streptococcus pneumoniae strain 15P2112]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=832434 U0450_RS05345 WP_000266667.1 1065100..1066197(-) (recF) [Streptococcus pneumoniae strain 15P2112]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAAGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

99.452

100

0.995
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46