Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QLH32_RS12980 Genome accession   NZ_CP125669
Coordinates   2725517..2726200 (-) Length   227 a.a.
NCBI ID   WP_283266555.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2720517..2731200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS12945 (QLH32_12945) - 2720541..2721359 (+) 819 WP_279958620.1 ABC transporter ATP-binding protein -
  QLH32_RS12950 (QLH32_12950) mlaE 2721356..2722135 (+) 780 WP_004678635.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  QLH32_RS12955 (QLH32_12955) - 2722135..2722812 (+) 678 WP_283266552.1 outer membrane lipid asymmetry maintenance protein MlaD -
  QLH32_RS12960 (QLH32_12960) - 2722833..2723465 (+) 633 WP_279958618.1 ABC transporter substrate-binding protein -
  QLH32_RS12965 (QLH32_12965) - 2723477..2723764 (+) 288 WP_283266553.1 STAS domain-containing protein -
  QLH32_RS12970 (QLH32_12970) - 2723810..2724823 (-) 1014 WP_267980685.1 CorA family divalent cation transporter -
  QLH32_RS12975 (QLH32_12975) - 2725168..2725563 (+) 396 WP_283266554.1 NUDIX domain-containing protein -
  QLH32_RS12980 (QLH32_12980) comF 2725517..2726200 (-) 684 WP_283266555.1 phosphoribosyltransferase family protein Machinery gene
  QLH32_RS12985 (QLH32_12985) recG 2726193..2728238 (-) 2046 WP_283266556.1 ATP-dependent DNA helicase RecG -
  QLH32_RS12990 (QLH32_12990) - 2728257..2729075 (+) 819 WP_283266557.1 NAD(P)H-binding protein -
  QLH32_RS12995 (QLH32_12995) - 2729198..2730178 (+) 981 WP_283266558.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26010.16 Da        Isoelectric Point: 9.0466

>NTDB_id=832358 QLH32_RS12980 WP_283266555.1 2725517..2726200(-) (comF) [Acinetobacter sp. KCTC 92772]
MFKLLGRSAQQVFDYFTPCSLCDIGVKQHFGVCQSCWQQLPWLRQHITRNQQQVFVACHYQYPIDRIIQQFKYEQKLHHQ
RLLNGLLLQLKLPKVQAIIPMPISTDRLAERGFNQSLLLAKVLGHNLNVPVWQPVQRLAQHSQKGFSRLERLEDIEQQFI
ADPSGKVRYRKVLIVDDVVTTGSSITALSKVLEQLGCQQIHSVCLAAAQHRESSLQGFADTMESPPL

Nucleotide


Download         Length: 684 bp        

>NTDB_id=832358 QLH32_RS12980 WP_283266555.1 2725517..2726200(-) (comF) [Acinetobacter sp. KCTC 92772]
ATGTTTAAATTACTTGGCAGATCAGCCCAACAGGTTTTTGATTATTTCACTCCATGCAGCCTGTGTGACATTGGCGTAAA
ACAGCATTTCGGCGTGTGCCAAAGTTGCTGGCAACAACTGCCGTGGTTGAGACAGCACATTACCCGTAACCAGCAACAGG
TGTTTGTTGCCTGCCATTATCAATATCCGATTGACCGCATCATTCAACAGTTTAAATATGAGCAAAAACTGCATCATCAA
CGTTTATTGAATGGCCTGTTGCTACAGCTCAAGCTTCCCAAAGTCCAGGCCATTATACCAATGCCAATTTCCACAGATCG
CTTGGCAGAACGCGGTTTTAACCAGAGCCTACTATTGGCTAAAGTGCTGGGGCATAACCTGAATGTTCCTGTCTGGCAGC
CTGTACAACGTCTGGCACAACACTCACAAAAAGGCTTTTCACGTCTAGAGAGATTGGAAGATATTGAGCAGCAATTTATT
GCCGACCCATCAGGAAAAGTCCGCTATCGAAAGGTGCTGATTGTGGATGATGTGGTGACTACAGGAAGTTCGATTACCGC
CTTGTCGAAAGTGCTGGAACAGCTCGGCTGCCAACAGATCCATAGTGTATGTTTGGCAGCCGCACAACATCGCGAGTCTA
GCTTACAAGGTTTTGCTGACACCATGGAATCACCACCTCTTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(156-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

65.865

91.63

0.604
  comF Acinetobacter baumannii strain A118

65.865

91.63

0.604