Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   QLH32_RS12650 Genome accession   NZ_CP125669
Coordinates   2661948..2662427 (+) Length   159 a.a.
NCBI ID   WP_283266505.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2656948..2667427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS12645 (QLH32_12645) - 2657660..2661883 (+) 4224 WP_283266504.1 PilC/PilY family type IV pilus protein -
  QLH32_RS12650 (QLH32_12650) comE 2661948..2662427 (+) 480 WP_283266505.1 type IV pilin protein Machinery gene
  QLH32_RS12655 (QLH32_12655) rpsP 2662591..2662848 (+) 258 WP_279958782.1 30S ribosomal protein S16 -
  QLH32_RS12660 (QLH32_12660) rimM 2662868..2663416 (+) 549 WP_283266506.1 ribosome maturation factor RimM -
  QLH32_RS12665 (QLH32_12665) trmD 2663463..2664203 (+) 741 WP_283266507.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QLH32_RS12670 (QLH32_12670) rplS 2664399..2664770 (+) 372 WP_283266508.1 50S ribosomal protein L19 -
  QLH32_RS12675 (QLH32_12675) - 2664830..2665804 (-) 975 WP_267980742.1 triacylglycerol lipase -
  QLH32_RS12680 (QLH32_12680) - 2665911..2666954 (-) 1044 WP_283266509.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17476.98 Da        Isoelectric Point: 9.0022

>NTDB_id=832357 QLH32_RS12650 WP_283266505.1 2661948..2662427(+) (comE) [Acinetobacter sp. KCTC 92772]
MLRLNQVSGFTLIELMITVAIVAIIAAIAIPSYDTYIRRADLSTAQQEMQKISALLEQHRTRNFSYDGFVFKGTPTSKGP
YFDVPNATNTTLLLPLDKLTGNQKFTLTLTVNSQTWSLKAVSENPQNYSALLTSTGFKCKTKTAASITINGCGSNSEDW

Nucleotide


Download         Length: 480 bp        

>NTDB_id=832357 QLH32_RS12650 WP_283266505.1 2661948..2662427(+) (comE) [Acinetobacter sp. KCTC 92772]
ATGCTTCGACTGAATCAGGTATCAGGTTTTACCCTGATAGAGTTGATGATCACGGTTGCAATCGTTGCAATTATCGCAGC
GATTGCTATACCAAGCTATGACACCTATATACGCCGTGCAGATTTATCCACGGCACAGCAGGAAATGCAAAAGATTTCTG
CCTTATTGGAACAGCACCGTACGCGTAACTTTAGTTATGATGGCTTTGTATTCAAAGGTACGCCGACTAGCAAAGGCCCT
TACTTTGATGTTCCGAATGCAACCAATACGACTTTATTGCTGCCATTGGACAAATTAACGGGCAATCAAAAGTTTACACT
TACCCTTACCGTAAATTCACAAACCTGGTCACTGAAAGCCGTAAGTGAAAACCCTCAAAATTATTCTGCTTTGTTAACAA
GCACGGGCTTTAAATGCAAAACCAAGACAGCAGCCAGTATTACCATCAATGGTTGTGGTAGCAACTCGGAAGACTGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-129)

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

48.214

100

0.509
  pilY2 Acinetobacter baumannii D1279779

38.323

100

0.403