Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   QLH32_RS12640 Genome accession   NZ_CP125669
Coordinates   2656894..2657646 (+) Length   250 a.a.
NCBI ID   WP_283266503.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2651894..2662646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS12615 (QLH32_12615) - 2653578..2654105 (+) 528 WP_283266498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QLH32_RS12620 (QLH32_12620) - 2654092..2654535 (+) 444 WP_283266499.1 type IV pilin protein -
  QLH32_RS12625 (QLH32_12625) - 2654810..2655313 (+) 504 WP_283266500.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QLH32_RS12630 (QLH32_12630) pilV 2655310..2655798 (+) 489 WP_283266501.1 type IV pilus modification protein PilV Machinery gene
  QLH32_RS12635 (QLH32_12635) - 2655800..2656897 (+) 1098 WP_283266502.1 PilW family protein -
  QLH32_RS12640 (QLH32_12640) pilX 2656894..2657646 (+) 753 WP_283266503.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QLH32_RS12645 (QLH32_12645) - 2657660..2661883 (+) 4224 WP_283266504.1 PilC/PilY family type IV pilus protein -
  QLH32_RS12650 (QLH32_12650) comE 2661948..2662427 (+) 480 WP_283266505.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27324.02 Da        Isoelectric Point: 8.1386

>NTDB_id=832356 QLH32_RS12640 WP_283266503.1 2656894..2657646(+) (pilX) [Acinetobacter sp. KCTC 92772]
MIKHQQGSTLIVVLMILLLITIVGTLAIRQSVSSLKLVSNNQVQTLLLQNADAALLKFQRPETTQTISSANGIVGFFKNE
DNWNKELVFCFKGSSPFNLSNASWLYWQGTTKHSQKMATGGGACQSLTADDKKDINNFSGGRSQVVTQVHIKRATSTTQP
FSDMARGTDAVNAKTENSMRLHVQVTSVMEGLLSNPENDLFDANTGCLNKSIEPPSGVQGLVQCLKDKNILYSTQVAEYR
FLSDFEPSGS

Nucleotide


Download         Length: 753 bp        

>NTDB_id=832356 QLH32_RS12640 WP_283266503.1 2656894..2657646(+) (pilX) [Acinetobacter sp. KCTC 92772]
ATGATTAAACATCAACAAGGTTCTACACTGATCGTTGTATTAATGATTCTGTTATTAATCACGATTGTGGGAACACTCGC
AATCAGACAGAGCGTCAGCTCATTAAAATTGGTCAGTAATAATCAGGTACAAACCTTGTTATTGCAAAATGCAGATGCTG
CATTATTGAAATTTCAACGTCCTGAAACAACACAAACCATTAGTAGTGCAAATGGTATTGTAGGTTTCTTTAAAAATGAG
GATAACTGGAATAAGGAGTTGGTTTTCTGTTTTAAGGGCAGTTCACCATTTAATTTGTCTAATGCGAGCTGGTTATATTG
GCAAGGAACAACAAAGCACAGCCAAAAGATGGCGACAGGTGGTGGAGCATGCCAGTCACTTACAGCCGATGATAAAAAAG
ACATCAATAATTTTTCAGGTGGCCGTTCTCAGGTGGTCACCCAAGTCCATATCAAGAGAGCCACTTCAACGACCCAGCCA
TTTTCTGACATGGCACGTGGTACAGATGCGGTCAATGCAAAAACTGAAAATAGTATGCGTCTGCATGTCCAGGTGACATC
TGTCATGGAGGGCCTGCTTTCAAATCCTGAGAATGATTTATTTGATGCCAATACAGGATGTCTAAACAAAAGTATTGAAC
CGCCATCAGGGGTACAGGGGTTGGTTCAATGCTTGAAAGATAAAAATATTTTATATAGCACACAAGTTGCAGAATATCGC
TTCTTATCTGACTTTGAACCCTCAGGTTCATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(6-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

51.21

99.2

0.508