Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | QLH32_RS12630 | Genome accession | NZ_CP125669 |
| Coordinates | 2655310..2655798 (+) | Length | 162 a.a. |
| NCBI ID | WP_283266501.1 | Uniprot ID | - |
| Organism | Acinetobacter sp. KCTC 92772 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2617504..2655313 | 2655310..2655798 | flank | -3 |
Gene organization within MGE regions
Location: 2617504..2655798
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLH32_RS12440 (QLH32_12440) | - | 2617504..2617977 (-) | 474 | WP_283266473.1 | BLUF domain-containing protein | - |
| QLH32_RS12445 (QLH32_12445) | - | 2618162..2618752 (+) | 591 | WP_279958691.1 | LemA family protein | - |
| QLH32_RS12450 (QLH32_12450) | - | 2618786..2619832 (+) | 1047 | WP_283266474.1 | TPM domain-containing protein | - |
| QLH32_RS12455 (QLH32_12455) | - | 2619826..2620386 (+) | 561 | WP_283266475.1 | TPM domain-containing protein | - |
| QLH32_RS12460 (QLH32_12460) | - | 2620787..2621155 (+) | 369 | WP_283266476.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| QLH32_RS12465 (QLH32_12465) | - | 2621284..2623122 (+) | 1839 | WP_283266477.1 | hypothetical protein | - |
| QLH32_RS12470 (QLH32_12470) | - | 2623221..2623568 (+) | 348 | WP_349307076.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| QLH32_RS12475 (QLH32_12475) | - | 2623579..2624430 (+) | 852 | WP_283266479.1 | glycosyltransferase family 2 protein | - |
| QLH32_RS12480 (QLH32_12480) | - | 2624432..2625154 (+) | 723 | WP_283266480.1 | class I SAM-dependent methyltransferase | - |
| QLH32_RS12485 (QLH32_12485) | - | 2625157..2626875 (+) | 1719 | WP_349307077.1 | ATP-binding cassette domain-containing protein | - |
| QLH32_RS12490 (QLH32_12490) | - | 2626901..2627800 (+) | 900 | WP_283266481.1 | rhamnosyltransferase | - |
| QLH32_RS12495 (QLH32_12495) | - | 2627877..2628917 (+) | 1041 | WP_283266482.1 | glycosyltransferase | - |
| QLH32_RS12500 (QLH32_12500) | - | 2629621..2630055 (+) | 435 | WP_283266483.1 | FdtA/QdtA family cupin domain-containing protein | - |
| QLH32_RS12505 (QLH32_12505) | - | 2630030..2631202 (+) | 1173 | WP_283266484.1 | formyltransferase family protein | - |
| QLH32_RS12510 (QLH32_12510) | - | 2631204..2632319 (+) | 1116 | WP_283266485.1 | DegT/DnrJ/EryC1/StrS family aminotransferase | - |
| QLH32_RS12515 (QLH32_12515) | - | 2632316..2633293 (+) | 978 | WP_283266486.1 | glycosyltransferase | - |
| QLH32_RS12520 (QLH32_12520) | - | 2633290..2633460 (-) | 171 | WP_283269336.1 | dTDP-4-dehydrorhamnose 3,5-epimerase family protein | - |
| QLH32_RS12525 (QLH32_12525) | - | 2633461..2634083 (-) | 623 | Protein_2447 | transposase | - |
| QLH32_RS12530 (QLH32_12530) | - | 2634129..2635249 (-) | 1121 | Protein_2448 | IS3 family transposase | - |
| QLH32_RS12535 (QLH32_12535) | - | 2635455..2635802 (+) | 348 | Protein_2449 | helix-turn-helix domain-containing protein | - |
| QLH32_RS12540 (QLH32_12540) | - | 2635979..2637118 (-) | 1140 | WP_283266487.1 | glycosyltransferase family 4 protein | - |
| QLH32_RS12545 (QLH32_12545) | tviB | 2637127..2638398 (-) | 1272 | WP_283269337.1 | Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB | - |
| QLH32_RS12550 (QLH32_12550) | - | 2638751..2640391 (+) | 1641 | WP_283266488.1 | O-antigen ligase family protein | - |
| QLH32_RS12555 (QLH32_12555) | bfr | 2640461..2640925 (-) | 465 | WP_004683390.1 | bacterioferritin | - |
| QLH32_RS12560 (QLH32_12560) | - | 2641165..2641359 (-) | 195 | WP_004678751.1 | bacterioferritin-associated ferredoxin | - |
| QLH32_RS12565 (QLH32_12565) | - | 2641579..2641962 (-) | 384 | WP_283266489.1 | RidA family protein | - |
| QLH32_RS12570 (QLH32_12570) | - | 2642127..2644235 (-) | 2109 | WP_283266490.1 | HD domain-containing protein | - |
| QLH32_RS12575 (QLH32_12575) | rpoZ | 2644442..2644720 (-) | 279 | WP_004678747.1 | DNA-directed RNA polymerase subunit omega | - |
| QLH32_RS12580 (QLH32_12580) | gmk | 2644806..2645429 (-) | 624 | WP_283266491.1 | guanylate kinase | - |
| QLH32_RS12585 (QLH32_12585) | ispH | 2645532..2646482 (+) | 951 | WP_283266492.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| QLH32_RS12590 (QLH32_12590) | - | 2646623..2647156 (+) | 534 | WP_283266493.1 | type II secretion system protein | - |
| QLH32_RS12595 (QLH32_12595) | pilV | 2647157..2647723 (+) | 567 | WP_283266494.1 | type IV pilus modification protein PilV | - |
| QLH32_RS12600 (QLH32_12600) | - | 2647726..2648712 (+) | 987 | WP_283266495.1 | PilW family protein | - |
| QLH32_RS12605 (QLH32_12605) | - | 2648712..2649512 (+) | 801 | WP_283266496.1 | pilus assembly protein | - |
| QLH32_RS12610 (QLH32_12610) | - | 2649527..2653567 (+) | 4041 | WP_283266497.1 | PilC/PilY family type IV pilus protein | - |
| QLH32_RS12615 (QLH32_12615) | - | 2653578..2654105 (+) | 528 | WP_283266498.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| QLH32_RS12620 (QLH32_12620) | - | 2654092..2654535 (+) | 444 | WP_283266499.1 | type IV pilin protein | - |
| QLH32_RS12625 (QLH32_12625) | - | 2654810..2655313 (+) | 504 | WP_283266500.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| QLH32_RS12630 (QLH32_12630) | pilV | 2655310..2655798 (+) | 489 | WP_283266501.1 | type IV pilus modification protein PilV | Machinery gene |
Sequence
Protein
Download Length: 162 a.a. Molecular weight: 16977.54 Da Isoelectric Point: 5.1351
>NTDB_id=832355 QLH32_RS12630 WP_283266501.1 2655310..2655798(+) (pilV) [Acinetobacter sp. KCTC 92772]
MNYINQKGVGLVEVLVALILLAIGVLGFAVLQLKAIDASSEASHQVLALTIARDLAERMRANPQATEDGEYKIGAVSVPT
TVVSTAAGKAVDIAAQDLKNAAVQAKNNGMNIAVGNCPVGTTRQCIYVAWDTTSLAGEKGLENCIKDGVYVQGSHCLFLE
AY
MNYINQKGVGLVEVLVALILLAIGVLGFAVLQLKAIDASSEASHQVLALTIARDLAERMRANPQATEDGEYKIGAVSVPT
TVVSTAAGKAVDIAAQDLKNAAVQAKNNGMNIAVGNCPVGTTRQCIYVAWDTTSLAGEKGLENCIKDGVYVQGSHCLFLE
AY
Nucleotide
Download Length: 489 bp
>NTDB_id=832355 QLH32_RS12630 WP_283266501.1 2655310..2655798(+) (pilV) [Acinetobacter sp. KCTC 92772]
ATGAATTATATCAATCAAAAAGGTGTAGGTTTAGTTGAAGTCTTGGTTGCTTTAATTTTATTGGCTATTGGCGTTTTGGG
TTTTGCGGTTTTGCAACTGAAAGCAATTGATGCAAGTTCAGAGGCCAGCCATCAGGTTTTGGCCCTCACTATAGCACGCG
ATCTGGCAGAAAGAATGCGTGCCAATCCTCAAGCGACAGAAGATGGTGAGTATAAAATTGGTGCAGTATCAGTACCAACA
ACAGTTGTCTCAACAGCAGCAGGAAAAGCCGTCGATATTGCTGCACAAGACCTTAAAAATGCGGCTGTTCAGGCCAAAAA
TAATGGGATGAATATTGCTGTAGGTAATTGCCCAGTTGGAACCACTCGGCAATGTATTTATGTGGCATGGGATACAACCT
CATTGGCTGGTGAGAAAGGTCTGGAAAACTGTATCAAAGATGGTGTGTATGTGCAGGGTTCACACTGTTTGTTTCTGGAG
GCTTACTAA
ATGAATTATATCAATCAAAAAGGTGTAGGTTTAGTTGAAGTCTTGGTTGCTTTAATTTTATTGGCTATTGGCGTTTTGGG
TTTTGCGGTTTTGCAACTGAAAGCAATTGATGCAAGTTCAGAGGCCAGCCATCAGGTTTTGGCCCTCACTATAGCACGCG
ATCTGGCAGAAAGAATGCGTGCCAATCCTCAAGCGACAGAAGATGGTGAGTATAAAATTGGTGCAGTATCAGTACCAACA
ACAGTTGTCTCAACAGCAGCAGGAAAAGCCGTCGATATTGCTGCACAAGACCTTAAAAATGCGGCTGTTCAGGCCAAAAA
TAATGGGATGAATATTGCTGTAGGTAATTGCCCAGTTGGAACCACTCGGCAATGTATTTATGTGGCATGGGATACAACCT
CATTGGCTGGTGAGAAAGGTCTGGAAAACTGTATCAAAGATGGTGTGTATGTGCAGGGTTCACACTGTTTGTTTCTGGAG
GCTTACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Acinetobacter baylyi ADP1 |
47.399 |
100 |
0.506 |
| pilV | Acinetobacter baumannii D1279779 |
41.341 |
100 |
0.457 |