Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   U0449_RS07645 Genome accession   NZ_CP139862
Coordinates   1483556..1484827 (-) Length   423 a.a.
NCBI ID   WP_001113222.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 05H0020-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1478556..1489827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0449_RS07615 - 1479039..1479884 (+) 846 WP_000819520.1 carbohydrate ABC transporter permease -
  U0449_RS07620 - 1479894..1481213 (+) 1320 WP_050218974.1 glycoside hydrolase family 32 protein -
  U0449_RS07625 - 1481608..1482021 (+) 414 WP_000794282.1 hypothetical protein -
  U0449_RS07630 - 1482272..1482847 (+) 576 WP_050131410.1 hypothetical protein -
  U0449_RS07635 - 1482816..1483142 (+) 327 WP_191239382.1 hypothetical protein -
  U0449_RS07645 rarA 1483556..1484827 (-) 1272 WP_001113222.1 replication-associated recombination protein A Machinery gene
  U0449_RS07650 - 1485097..1485336 (+) 240 WP_000818078.1 hypothetical protein -
  U0449_RS07655 - 1485501..1485680 (+) 180 WP_050210112.1 hypothetical protein -
  U0449_RS07660 - 1485868..1485996 (+) 129 WP_224757410.1 type II toxin-antitoxin system HicA family toxin -
  U0449_RS07665 - 1486033..1486485 (+) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  U0449_RS07670 - 1486776..1487246 (+) 471 WP_000257089.1 DUF3013 family protein -
  U0449_RS07675 - 1487265..1488332 (+) 1068 WP_000719721.1 site-2 protease family protein -
  U0449_RS07680 - 1488334..1488762 (+) 429 WP_000401989.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46968.44 Da        Isoelectric Point: 6.0996

>NTDB_id=832355 U0449_RS07645 WP_001113222.1 1483556..1484827(-) (rarA) [Streptococcus pneumoniae strain 05H0020-2]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFNFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=832355 U0449_RS07645 WP_001113222.1 1483556..1484827(-) (rarA) [Streptococcus pneumoniae strain 05H0020-2]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTAATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCACTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57