Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   QLH32_RS02820 Genome accession   NZ_CP125669
Coordinates   568818..569207 (-) Length   129 a.a.
NCBI ID   WP_267979638.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563818..574207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS02790 (QLH32_02790) tadA 564081..564593 (-) 513 WP_267979633.1 tRNA adenosine(34) deaminase TadA -
  QLH32_RS02795 (QLH32_02795) - 564600..565724 (-) 1125 WP_283269278.1 enoyl-CoA hydratase/isomerase family protein -
  QLH32_RS02800 (QLH32_02800) ung 565721..566434 (-) 714 WP_267979634.1 uracil-DNA glycosylase -
  QLH32_RS02805 (QLH32_02805) - 566481..567077 (-) 597 WP_267979635.1 6-carboxytetrahydropterin synthase -
  QLH32_RS02810 (QLH32_02810) gspK 567209..568183 (-) 975 WP_283267990.1 type II secretion system minor pseudopilin GspK -
  QLH32_RS02815 (QLH32_02815) xcpW 568180..568821 (-) 642 WP_283267991.1 type II secretion system minor pseudopilin GspJ Machinery gene
  QLH32_RS02820 (QLH32_02820) xcpV 568818..569207 (-) 390 WP_267979638.1 type II secretion system minor pseudopilin GspI Machinery gene
  QLH32_RS02825 (QLH32_02825) - 569194..569745 (-) 552 WP_267979639.1 type II secretion system protein -
  QLH32_RS02830 (QLH32_02830) - 569758..570369 (-) 612 WP_267980035.1 TetR/AcrR family transcriptional regulator -
  QLH32_RS02835 (QLH32_02835) - 570407..571180 (-) 774 WP_283267992.1 TatD family hydrolase -
  QLH32_RS02840 (QLH32_02840) - 571204..571548 (-) 345 WP_004682232.1 PilZ domain-containing protein -
  QLH32_RS02845 (QLH32_02845) - 571900..572409 (-) 510 Protein_568 hypothetical protein -
  QLH32_RS02850 (QLH32_02850) - 572571..572876 (-) 306 WP_267979642.1 hypothetical protein -
  QLH32_RS02855 (QLH32_02855) - 573099..574070 (-) 972 WP_283269279.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14339.66 Da        Isoelectric Point: 9.5672

>NTDB_id=832327 QLH32_RS02820 WP_267979638.1 568818..569207(-) (xcpV) [Acinetobacter sp. KCTC 92772]
MNKIKAFTLLEVMVALAIFAVAAIALTKIAMQYTQSTSNAILRTKAQFVAMNEVAMMEMNQEWLEGTQSKQVTSQGETWQ
IDKKAQATISPNIQRIELQVSLFNTEQGKVEAGVTNMVFFNYPAKAKTS

Nucleotide


Download         Length: 390 bp        

>NTDB_id=832327 QLH32_RS02820 WP_267979638.1 568818..569207(-) (xcpV) [Acinetobacter sp. KCTC 92772]
ATGAACAAGATTAAAGCCTTTACCTTACTTGAAGTGATGGTGGCACTTGCTATCTTTGCTGTGGCAGCGATTGCATTAAC
TAAAATTGCCATGCAATACACACAGTCAACCTCCAATGCGATTTTGCGGACCAAGGCACAATTTGTGGCCATGAATGAAG
TGGCCATGATGGAAATGAATCAGGAATGGCTGGAGGGAACGCAGTCCAAACAAGTCACCTCACAGGGGGAAACTTGGCAG
ATTGACAAAAAGGCACAGGCAACCATTAGTCCCAATATTCAGCGGATAGAATTGCAGGTGAGCCTGTTTAATACGGAACA
AGGTAAAGTTGAAGCAGGGGTCACCAACATGGTGTTTTTTAACTACCCAGCAAAAGCCAAAACATCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Type II secretion system (T2SS), protein I (T2SSI)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

83.2

96.899

0.806