Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   QLH32_RS02815 Genome accession   NZ_CP125669
Coordinates   568180..568821 (-) Length   213 a.a.
NCBI ID   WP_283267991.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563180..573821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS02785 (QLH32_02785) - 563576..564016 (-) 441 WP_004679478.1 SRPBCC family protein -
  QLH32_RS02790 (QLH32_02790) tadA 564081..564593 (-) 513 WP_267979633.1 tRNA adenosine(34) deaminase TadA -
  QLH32_RS02795 (QLH32_02795) - 564600..565724 (-) 1125 WP_283269278.1 enoyl-CoA hydratase/isomerase family protein -
  QLH32_RS02800 (QLH32_02800) ung 565721..566434 (-) 714 WP_267979634.1 uracil-DNA glycosylase -
  QLH32_RS02805 (QLH32_02805) - 566481..567077 (-) 597 WP_267979635.1 6-carboxytetrahydropterin synthase -
  QLH32_RS02810 (QLH32_02810) gspK 567209..568183 (-) 975 WP_283267990.1 type II secretion system minor pseudopilin GspK -
  QLH32_RS02815 (QLH32_02815) xcpW 568180..568821 (-) 642 WP_283267991.1 type II secretion system minor pseudopilin GspJ Machinery gene
  QLH32_RS02820 (QLH32_02820) xcpV 568818..569207 (-) 390 WP_267979638.1 type II secretion system minor pseudopilin GspI Machinery gene
  QLH32_RS02825 (QLH32_02825) - 569194..569745 (-) 552 WP_267979639.1 type II secretion system protein -
  QLH32_RS02830 (QLH32_02830) - 569758..570369 (-) 612 WP_267980035.1 TetR/AcrR family transcriptional regulator -
  QLH32_RS02835 (QLH32_02835) - 570407..571180 (-) 774 WP_283267992.1 TatD family hydrolase -
  QLH32_RS02840 (QLH32_02840) - 571204..571548 (-) 345 WP_004682232.1 PilZ domain-containing protein -
  QLH32_RS02845 (QLH32_02845) - 571900..572409 (-) 510 Protein_568 hypothetical protein -
  QLH32_RS02850 (QLH32_02850) - 572571..572876 (-) 306 WP_267979642.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24518.16 Da        Isoelectric Point: 8.2164

>NTDB_id=832326 QLH32_RS02815 WP_283267991.1 568180..568821(-) (xcpW) [Acinetobacter sp. KCTC 92772]
MKYKQAFTLVELLVAIAIFAVLSMLGWKVFDYLLKVKDRNAEHETYLFELQDAYQQILRDSLQIIPLTANDGRQLQAALL
LNDRSFMFSKAGVSDPLKQGVSPYERIEYRYDSAQKKVYRLKYANLNIPNRVQPISSTLLERVDQFKITVLNPQELTQWP
ENINDPNDVTELKKLPLGFKVQLTVAGTDYEWIYSLLNTNKLSASQNNQATPP

Nucleotide


Download         Length: 642 bp        

>NTDB_id=832326 QLH32_RS02815 WP_283267991.1 568180..568821(-) (xcpW) [Acinetobacter sp. KCTC 92772]
ATGAAATATAAACAAGCATTTACCTTGGTTGAATTGTTGGTTGCGATTGCAATTTTTGCGGTACTTTCAATGCTGGGCTG
GAAAGTCTTTGATTATTTGTTAAAGGTCAAGGACCGTAATGCGGAGCATGAAACCTATCTGTTTGAACTACAGGACGCTT
ATCAGCAAATTTTGAGGGATAGCCTACAAATCATTCCTTTAACTGCCAATGATGGTAGACAATTACAAGCGGCTTTGTTG
TTAAATGATCGAAGTTTTATGTTTAGTAAGGCTGGTGTCTCAGATCCATTAAAGCAGGGTGTGTCGCCTTATGAACGTAT
CGAATATCGCTATGATTCTGCACAGAAGAAAGTCTATCGTTTAAAATATGCAAATCTCAATATCCCTAATCGGGTGCAAC
CGATTTCCAGTACGCTGTTAGAACGGGTGGACCAGTTTAAAATTACCGTTCTCAACCCACAAGAACTGACCCAATGGCCT
GAAAATATCAATGATCCAAACGATGTGACTGAATTAAAAAAACTACCTTTAGGGTTTAAGGTACAGTTGACTGTTGCAGG
CACAGATTATGAGTGGATTTATAGTCTACTGAATACTAATAAGCTGTCAGCAAGCCAAAATAATCAGGCGACGCCACCAT
GA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

70.732

96.244

0.681