Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QLX69_RS00040 Genome accession   NZ_CP125629
Coordinates   9235..9810 (+) Length   191 a.a.
NCBI ID   WP_003715685.1    Uniprot ID   -
Organism   Limosilactobacillus oris strain BSLO1801     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4235..14810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX69_RS00030 (QLX69_00030) gyrA 6175..8709 (+) 2535 WP_283191500.1 DNA gyrase subunit A -
  QLX69_RS00035 (QLX69_00035) rpsF 8903..9199 (+) 297 WP_003712079.1 30S ribosomal protein S6 -
  QLX69_RS00040 (QLX69_00040) ssb 9235..9810 (+) 576 WP_003715685.1 single-stranded DNA-binding protein Machinery gene
  QLX69_RS00045 (QLX69_00045) rpsR 9843..10079 (+) 237 WP_003665240.1 30S ribosomal protein S18 -
  QLX69_RS00050 (QLX69_00050) - 10153..10335 (+) 183 WP_283191501.1 hypothetical protein -
  QLX69_RS00055 (QLX69_00055) - 10460..12481 (+) 2022 WP_003712021.1 DHH family phosphoesterase -
  QLX69_RS00060 (QLX69_00060) rplI 12487..12939 (+) 453 WP_003712030.1 50S ribosomal protein L9 -
  QLX69_RS00065 (QLX69_00065) dnaB 12972..14387 (+) 1416 WP_283191502.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20883.52 Da        Isoelectric Point: 4.7278

>NTDB_id=831990 QLX69_RS00040 WP_003715685.1 9235..9810(+) (ssb) [Limosilactobacillus oris strain BSLO1801]
MINRAVLTGRLTRDPELRYTTSGTAVVSFTLAVDRQFRNQNGDRDADFVNCVIWRKSAENFSNFTHKGSLVGVEGRIQTR
NYENQQGNRVYVTEVVVDNFALLEPRQNGGMNQGGQQQPFNNGSNQPFAGQPQQQFGGNQPQTNNAPQGNPSSNNGFGGN
APANNDAPFSAGNTNNDGEQKIDVSDDELPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=831990 QLX69_RS00040 WP_003715685.1 9235..9810(+) (ssb) [Limosilactobacillus oris strain BSLO1801]
ATGATTAATCGTGCAGTCTTAACTGGGCGTTTAACGAGAGATCCTGAGTTGCGGTACACGACGAGCGGGACAGCGGTAGT
ATCATTTACCCTGGCTGTTGACCGGCAATTCCGGAACCAGAACGGGGACCGGGACGCCGACTTTGTCAACTGCGTCATCT
GGCGTAAGTCCGCGGAAAACTTCAGTAACTTCACGCATAAGGGTTCCCTAGTGGGGGTCGAAGGCCGGATTCAAACCCGG
AACTACGAAAACCAGCAGGGTAACCGGGTATACGTTACCGAAGTCGTCGTTGATAACTTCGCATTGCTTGAACCCCGGCA
AAATGGCGGGATGAACCAGGGCGGTCAGCAACAACCATTTAACAATGGCAGCAATCAACCGTTTGCCGGTCAGCCCCAGC
AGCAATTCGGTGGTAATCAGCCACAGACTAATAATGCTCCTCAAGGGAATCCATCATCAAATAACGGCTTCGGTGGGAAC
GCCCCAGCCAATAACGATGCGCCTTTCTCTGCCGGCAATACGAATAATGACGGCGAACAAAAGATTGACGTGTCAGATGA
TGAATTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.184

100

0.607
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.832

100

0.518