Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QFX16_RS24860 Genome accession   NZ_CP125619
Coordinates   5383063..5384652 (+) Length   529 a.a.
NCBI ID   WP_283181719.1    Uniprot ID   -
Organism   Pseudomonas svalbardensis strain PMCC 200367     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5378063..5389652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX16_RS24835 pgeF 5378421..5379146 (-) 726 WP_283181717.1 peptidoglycan editing factor PgeF -
  QFX16_RS24840 rluD 5379143..5380105 (-) 963 WP_046048807.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QFX16_RS24845 - 5380257..5381279 (+) 1023 WP_283181718.1 outer membrane protein assembly factor BamD -
  QFX16_RS24850 - 5381324..5382655 (-) 1332 WP_283181584.1 IS4 family transposase -
  QFX16_RS24855 - 5382840..5383073 (+) 234 WP_008154904.1 PP0621 family protein -
  QFX16_RS24860 pilS 5383063..5384652 (+) 1590 WP_283181719.1 PAS domain-containing sensor histidine kinase Regulator
  QFX16_RS24865 pilR 5384655..5385995 (+) 1341 WP_283181720.1 sigma-54 dependent transcriptional regulator Regulator
  QFX16_RS24870 thiO 5386154..5387254 (-) 1101 WP_283181721.1 glycine oxidase ThiO -
  QFX16_RS24875 - 5387311..5387712 (-) 402 WP_283181722.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58556.44 Da        Isoelectric Point: 6.9388

>NTDB_id=831957 QFX16_RS24860 WP_283181719.1 5383063..5384652(+) (pilS) [Pseudomonas svalbardensis strain PMCC 200367]
MIAETSSPGSKQAQRLLRLYHLYRLSIGITLVLLISSNMDNQLLTFSNDDLLRSGSWFYLVLNILLVVFLGNTRRPAQLF
SLALSDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRGRIGLLIAAVGALGIVGLSFLLSFSHPATPNDYLQVGTLG
ALCFAAALLVQGLSRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDDKRRVQLANHSALNLLGRENLAGQLID
DYLPSLVERLQLWLNNPTLRPQSLKVASSGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLQESEELNRADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVALRLDLKPWLEQFVNETREGATEH
QQIHLRIGSGDFKTLMDPDQLTQILDNLLRNAWRHSALNHDLAQVWLELFVDPDSQLPILEILDDGPGVAPEHHVHLFEP
FFTTSPQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=831957 QFX16_RS24860 WP_283181719.1 5383063..5384652(+) (pilS) [Pseudomonas svalbardensis strain PMCC 200367]
GTGATCGCTGAGACCTCCAGTCCCGGCAGCAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTTTACCGTTTGAGCAT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGCTGCTGACGTTCAGCAATGACGACCTGCTGCGCA
GTGGCAGCTGGTTTTACCTGGTGCTGAATATCCTGCTGGTGGTATTCCTCGGGAACACCCGGCGCCCGGCGCAACTGTTC
AGCCTGGCGCTGTCCGACGTCCTGCTGCTGTGCGGTCTGTTCTACGCCGCCGGCGGTGTGGCCAGCGCCATCGGCAACTT
GCTTATCGTATCGGTAGCCATCAGTAACACCTTGTTGCGCGGGCGCATCGGCCTGCTGATTGCCGCCGTTGGCGCGCTTG
GCATCGTCGGGCTGAGCTTCCTCCTGAGTTTCAGCCATCCCGCCACCCCCAACGATTACCTGCAAGTCGGCACGCTCGGC
GCCTTGTGTTTTGCTGCGGCATTGCTGGTGCAAGGGCTGAGCCGACGCCTGGAGGTCAGCGAAACCCTCGCCGAACAACG
GGCCAGCGAAGTCGTCGGCCTCGAAGCCCTCAACGCACTGATCCTGCAACGCATGCGTACCGGCATCCTGGTACTCGACG
ACAAGCGGCGGGTTCAACTGGCCAACCACAGCGCCTTGAACCTGTTAGGCAGGGAAAATCTTGCAGGCCAGCTGATCGAC
GACTACTTACCCAGCCTGGTCGAACGCCTGCAACTGTGGCTCAACAATCCGACGCTGCGCCCCCAGAGCCTGAAAGTCGC
CAGTAGTGGTCTGGAGCTGCAACCGAGCTTCATTGCCCTGGACCAAAGCCCTCACCACCAGACCCTGGTTTTTCTCGAAG
ACCTCGCGCAAATCGCTCAACAAGCCCAGCAATTGAAGCTCGCCGCCCTCGGTCGCCTGACCGCCGGTATCGCCCATGAA
ATCCGCAATCCACTGGGCGCCGTTAGTCATGCCGCGCAGCTATTGCAGGAATCAGAGGAACTGAACCGCGCGGATCGACG
TCTGACACAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTAATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGTAGCGCTACGGCTTGATCTGAAGCCGTGGCTGGAGCAGTTCGTCAACGAAACCCGCGAGGGGGCGACCGAGCAT
CAGCAGATTCATCTGCGCATCGGCTCAGGGGACTTCAAAACCCTGATGGACCCAGACCAGCTGACCCAGATTCTCGACAA
TCTGTTGCGCAATGCCTGGCGCCATAGCGCCTTGAATCACGACCTGGCGCAGGTCTGGCTCGAGTTGTTCGTCGACCCGG
ACAGCCAGCTACCGATCCTCGAGATCCTCGACGATGGCCCCGGCGTGGCACCGGAGCATCATGTGCACTTGTTCGAACCG
TTCTTCACCACCAGCCCCCAAGGCACCGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGTTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603