Detailed information NTG0831958

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QFX16_RS24865
• Genome accession: NZ_CP125619
• Coordinates: 5384655..5385995 (+)
• Length: 446 a.a.
• NCBI ID: WP_283181720.1
• Uniprot ID: -
• Organism: Pseudomonas svalbardensis strain PMCC 200367
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5379655..5390995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFX16_RS24845	-	5380257..5381279 (+)	1023	WP_283181718.1	outer membrane protein assembly factor BamD	-
QFX16_RS24850	-	5381324..5382655 (-)	1332	WP_283181584.1	IS4 family transposase	-
QFX16_RS24855	-	5382840..5383073 (+)	234	WP_008154904.1	PP0621 family protein	-
QFX16_RS24860	pilS	5383063..5384652 (+)	1590	WP_283181719.1	PAS domain-containing sensor histidine kinase	Regulator
QFX16_RS24865	pilR	5384655..5385995 (+)	1341	WP_283181720.1	sigma-54 dependent transcriptional regulator	Regulator
QFX16_RS24870	thiO	5386154..5387254 (-)	1101	WP_283181721.1	glycine oxidase ThiO	-
QFX16_RS24875	-	5387311..5387712 (-)	402	WP_283181722.1	type IV pilin protein	-
QFX16_RS24880	-	5387727..5390843 (-)	3117	WP_283181723.1	pilus assembly protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49722.98 Da
• Isoelectric Point: 6.5105

>NTDB_id=831958 QFX16_RS24865 WP_283181720.1 5384655..5385995(+) (pilR) [Pseudomonas svalbardensis strain PMCC 200367]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLSRETFDLCLTDMRLPDGTGLELVQHIQQRHPNVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSSALRLPAPGGTGIAIDRRLLGDSPPMRALRKHIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRGVGEQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIESLASH
VLKRLAISTGQPAAKLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCNPEGGVPDLTQIDNLE
DYLENVERNLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKFGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=831958 QFX16_RS24865 WP_283181720.1 5384655..5385995(+) (pilR) [Pseudomonas svalbardensis strain PMCC 200367]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCTTCAGTGCCCGCAACCTCGGCGAAGCCCAGGCCCTGCTGTCGCGAGAGACGTTCGATTTGTGCCTGA
CCGACATGCGCTTGCCGGACGGCACCGGCCTTGAGCTGGTGCAACACATCCAGCAACGCCACCCAAACGTACCGGTGGCA
ATGATCACCGCTTACGGCAGCCTGGAAACGGCGATCAACGCCCTCAAGGCCGGCGCGTTCGACTTCCTGACCAAACCGGT
GGACCTCACTCGCCTGCGGGAACTGGTCAGCAGCGCACTTCGGTTGCCTGCGCCGGGCGGCACAGGCATCGCCATCGATC
GCCGGCTGCTGGGCGATTCACCGCCGATGCGCGCCTTGCGCAAACACATCGACAAACTGGCCCGCAGCCAGGCGCCGGTG
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAATTGGTTGCGCGACTGATCCATGAGCAAGGACCGCGCGCCAGCCAACC
GTTTGTCCCGGTCAATTGCGGGGCGATTCCGTCGGAATTGATGGAGAGCGAATTTTTCGGGCATCGCAAAGGCAGCTTCA
GCGGTGCCATCGAAGACAAACCCGGACTGTTCCAGGCTGCCCATGGCGGCACCCTGTTCCTAGACGAAGTGGCAGATTTG
CCGCTGGCGATGCAGGTCAAACTGCTACGGGCAATACAGGAAAAAGCCGTTCGCGGTGTCGGCGAGCAACAGGAAACCGT
GGTCGACGTGCGTATCCTTTGCGCCACCCACAAAGACCTCGACGCCGAAGTCGCCGCCGAACGCTTTCGCCAGGATTTGT
ACTACCGGTTGAACGTGATTGAACTACGGGTGCCGCCCTTGCGCGAACGCCGTGACGACATCGAATCCCTCGCCAGCCAT
GTGCTCAAACGCTTGGCCATCAGCACTGGCCAACCCGCCGCAAAACTCCACCCCCAAGCCCTCGACGCGCTGAAAAGCTA
CCGCTTCCCCGGCAACGTGCGGGAACTGGAGAACATGCTCGAACGGGCGCACACGTTGTGCGAAAACAAACAGATTGAAG
CCAGCGACCTGCGACTGGCCGAAGGCAACTGCAACCCGGAAGGTGGTGTGCCGGACCTGACACAGATCGACAACCTGGAA
GACTACCTGGAAAACGTCGAACGCAACCTTATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACTGCGGCGGCTCA
GCGGTTGAATTTATCGTTTCGGTCGATGCGCTACAGGCTGAAGAAATTCGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.458	99.327	0.789
pilR	Acinetobacter baumannii strain A118	49.673	100	0.511