Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QFW87_RS21945 Genome accession   NZ_CP125618
Coordinates   4792912..4793547 (-) Length   211 a.a.
NCBI ID   WP_283181269.1    Uniprot ID   -
Organism   Pseudomonas sp. PMCC200344     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4787912..4798547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW87_RS21910 - 4788304..4788777 (-) 474 WP_283181264.1 (2Fe-2S)-binding protein -
  QFW87_RS21915 murB 4789022..4790041 (-) 1020 WP_283188871.1 UDP-N-acetylmuramate dehydrogenase -
  QFW87_RS21920 - 4790038..4790502 (-) 465 WP_283188872.1 low molecular weight protein-tyrosine-phosphatase -
  QFW87_RS21925 kdsB 4790502..4791266 (-) 765 WP_046049062.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QFW87_RS21930 - 4791263..4791448 (-) 186 WP_007945752.1 Trm112 family protein -
  QFW87_RS21935 lpxK 4791474..4792484 (-) 1011 WP_283181267.1 tetraacyldisaccharide 4'-kinase -
  QFW87_RS21940 - 4792484..4792915 (-) 432 WP_283188873.1 biopolymer transporter ExbD -
  QFW87_RS21945 exbB 4792912..4793547 (-) 636 WP_283181269.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QFW87_RS21950 comA 4793645..4795867 (-) 2223 WP_283188874.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QFW87_RS21955 - 4796003..4796521 (+) 519 WP_283181271.1 DUF2062 domain-containing protein -
  QFW87_RS21960 - 4796660..4797439 (-) 780 WP_283188875.1 ABC transporter permease -
  QFW87_RS21965 - 4797436..4798368 (-) 933 WP_033056918.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22928.09 Da        Isoelectric Point: 7.3616

>NTDB_id=831920 QFW87_RS21945 WP_283181269.1 4792912..4793547(-) (exbB) [Pseudomonas sp. PMCC200344]
MWELVKSGGWMMIPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVVHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLNGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=831920 QFW87_RS21945 WP_283181269.1 4792912..4793547(-) (exbB) [Pseudomonas sp. PMCC200344]
GTGTGGGAATTGGTCAAATCCGGCGGATGGATGATGATACCGATCATTCTGAGTTCCATCGCAGCCATGGCGATCGTCGC
CGAACGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCAACTCGCCGCTGGGCGAAATCCTGGCTGCCGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATAGAAGAAGCCGCCGCGCGAGTGGTTCACGAGCTCGAACGCTACAT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCGTTGCTGGGTCTGTTGGGGACGGTGTTGGGCATGATCGATATCTTCA
GCGCATTCATGGGTTCGGGCATGACCACTAACGCTGCCGTGTTGGCCGGTGGTATCTCCAAGGCCCTGATTACTACGGCC
GCAGGCCTGATGGTCGGCATCCCGGCGGTATTCTTCCACCGGTTCCTGCAACGCCGGATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTTGTCGAGGTGGTGCAGGGCGACCGTGATGTTGACCTGAATGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848