Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QFW87_RS21950 Genome accession   NZ_CP125618
Coordinates   4793645..4795867 (-) Length   740 a.a.
NCBI ID   WP_283188874.1    Uniprot ID   -
Organism   Pseudomonas sp. PMCC200344     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4788645..4800867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW87_RS21915 murB 4789022..4790041 (-) 1020 WP_283188871.1 UDP-N-acetylmuramate dehydrogenase -
  QFW87_RS21920 - 4790038..4790502 (-) 465 WP_283188872.1 low molecular weight protein-tyrosine-phosphatase -
  QFW87_RS21925 kdsB 4790502..4791266 (-) 765 WP_046049062.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QFW87_RS21930 - 4791263..4791448 (-) 186 WP_007945752.1 Trm112 family protein -
  QFW87_RS21935 lpxK 4791474..4792484 (-) 1011 WP_283181267.1 tetraacyldisaccharide 4'-kinase -
  QFW87_RS21940 - 4792484..4792915 (-) 432 WP_283188873.1 biopolymer transporter ExbD -
  QFW87_RS21945 exbB 4792912..4793547 (-) 636 WP_283181269.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QFW87_RS21950 comA 4793645..4795867 (-) 2223 WP_283188874.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QFW87_RS21955 - 4796003..4796521 (+) 519 WP_283181271.1 DUF2062 domain-containing protein -
  QFW87_RS21960 - 4796660..4797439 (-) 780 WP_283188875.1 ABC transporter permease -
  QFW87_RS21965 - 4797436..4798368 (-) 933 WP_033056918.1 ABC transporter ATP-binding protein -
  QFW87_RS21970 - 4798502..4799125 (-) 624 WP_283188876.1 glutathione S-transferase -
  QFW87_RS21975 - 4799169..4799828 (-) 660 WP_283188877.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 81744.26 Da        Isoelectric Point: 10.2225

>NTDB_id=831921 QFW87_RS21950 WP_283188874.1 4793645..4795867(-) (comA) [Pseudomonas sp. PMCC200344]
MRTGMMALALGLLILRFLPILPPVWLWLLLPVMGLMALPFRTYPLAFFLFGFSWACANAQWALDDRLPMSLDSETRWVEG
RVTGLPQINEAVVRFELADARSRHGKVPKLLRLAWYDGPPVNSGEHWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
AVKAGERLKEAQWAWRDGIRQRLQSVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPKRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPVANLLAVPWISLVVLPPAL
LGTLFLPLPYVGEGLLWLAGGLIDLLFKGLTLMAGYLPAWVPVAIPLWIWALGTVGAFLLLMPRGVPFRSLGWPMLLLLV
FPPRQVLPEGIAEVWQLDVGQGLAILVRTRHHTLLYDTGPRFGDFDLGERVVLPTLRKLGVNGLDLMLISHADADHAGGA
RAVANGLPVKRVVSGDPLALPAELQAEGCESGKQWVWDDVRFQLWQWSSASDSNQKSCVLQIEANGERLLLTGDIDTVAE
RALLDSPLAVTTDWLQAPHHGSRSSSSMALLTGLQPKAVLISRGQGNSFGHPHPTIMARYRKRGMSIHDSAEQGAIRLQL
GRFKPPWTMRQERRFWRSVQ

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=831921 QFW87_RS21950 WP_283188874.1 4793645..4795867(-) (comA) [Pseudomonas sp. PMCC200344]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGTTGATCTTGCGTTTTTTACCGATACTACCGCCGGTCTGGTTGTG
GCTGTTGTTGCCAGTCATGGGATTGATGGCGCTGCCGTTCAGGACTTATCCGTTGGCGTTTTTCCTGTTCGGCTTCAGTT
GGGCGTGCGCGAATGCACAGTGGGCGCTGGATGATCGGCTGCCGATGAGCCTCGATAGCGAAACCCGTTGGGTCGAAGGT
CGGGTGACGGGATTGCCGCAGATCAATGAGGCCGTCGTGCGTTTCGAGTTGGCGGACGCCCGGTCGCGACATGGGAAGGT
GCCGAAACTTCTGCGCCTGGCCTGGTATGACGGGCCGCCGGTCAACAGCGGCGAACATTGGCGACTGGCGGTCAAGTTGA
AGCGTCCTGCGGGGCTGCTCAATCCCCATGCCTTCGATTACGACGCCTGGCTGTTGGCGCAACGCATCGGCGCTACCGGG
GCGGTCAAGGCTGGCGAGCGGCTCAAGGAAGCCCAATGGGCCTGGCGCGACGGCATCCGTCAGCGCTTGCAGTCCGTGGA
TGCCCAGGGACGAACGGGAGCGCTGACGGCGTTGGTGCTGGGGGATGGCGCCGGACTGAGTCGCGAAGACTGGCAGGTGC
TGCAAGACACCGGCACCGTCCATCTGTTGGTGATTTCCGGACAACACATCGGGTTGTTGGCAGGGCTGGTGTATCTGTTG
ATTGCCGGGCTGGCCCGTTATGGCCTGTGGCCGAAACGCTTGCCTTGGCTGCCGTGGGCCTGTGGACTCGCGTTCGCGGC
CGCTCTCGGTTATGGGCTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGGGCCTGCGTGATGATCGGTCTGGTGCTGTTGT
GGCGCCTGCGATTTCGTCACCTCGGCGCCTGGTGGCCGTTGTTGCTGGCGCTCGACGGTGTTTTGCTGCTGGATCCGCTG
GCGAGTCTGCAACCGGGTTTCTGGCTGTCGTTCGCGGCGGTGGCGGTGTTGATCTTCACCTTCGGTGGTCGGCTGGGCCC
ATGGCGTTGGTGGCAAACGTGGACCCGTGCCCAATGGCTGATCGCGATTGGTCTGTGCCCGTTGCTGCTGGTGCTCGGGT
TGCCGATCAGTCTCAGCGGGCCGGTGGCCAATTTGCTCGCGGTGCCGTGGATCAGCCTGGTCGTGCTGCCTCCGGCATTG
CTGGGTACGTTGTTTTTACCCCTTCCTTACGTGGGCGAAGGGTTGCTGTGGTTGGCAGGAGGTTTGATCGACCTCTTGTT
CAAGGGCCTGACGCTGATGGCCGGGTATTTACCCGCGTGGGTCCCGGTGGCCATCCCGTTGTGGATATGGGCACTCGGCA
CAGTCGGTGCCTTTCTACTATTGATGCCTCGGGGTGTGCCGTTTCGCTCGTTGGGTTGGCCGATGCTGTTGTTGCTGGTT
TTTCCACCCCGGCAGGTCTTGCCTGAAGGCATCGCCGAAGTTTGGCAGCTGGATGTCGGCCAGGGTTTGGCCATCCTGGT
GCGCACCCGTCATCACACACTGTTGTATGACACCGGGCCACGTTTCGGCGATTTCGACCTGGGCGAGCGGGTGGTGCTGC
CGACTTTACGCAAACTGGGCGTGAATGGACTCGATTTGATGTTGATCAGCCATGCTGACGCCGATCATGCGGGCGGCGCC
CGGGCCGTTGCCAATGGCCTGCCGGTGAAACGGGTGGTCAGTGGCGATCCCCTGGCGCTGCCGGCCGAATTGCAGGCAGA
AGGCTGCGAGAGCGGCAAGCAATGGGTCTGGGATGATGTGAGGTTCCAGCTCTGGCAGTGGTCTTCGGCCAGCGACAGCA
ATCAAAAATCCTGCGTCCTGCAGATAGAAGCCAACGGTGAGCGTCTGTTATTGACCGGTGATATAGACACCGTAGCCGAG
CGGGCACTGCTCGACAGTCCACTCGCCGTCACCACCGATTGGTTGCAGGCACCGCACCACGGCAGTCGCAGCTCATCTTC
CATGGCGCTGCTTACCGGGCTGCAACCCAAAGCAGTGCTGATCTCCCGCGGCCAGGGCAATTCATTCGGTCATCCCCATC
CCACGATCATGGCGCGCTATCGAAAGCGTGGCATGTCGATCCATGACAGCGCCGAACAGGGTGCCATCCGTCTGCAACTG
GGACGCTTCAAGCCGCCATGGACGATGCGTCAAGAACGGCGTTTCTGGCGCTCTGTGCAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.57

96.757

0.605
  comA Ralstonia pseudosolanacearum GMI1000

32.818

100

0.373