Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   QMK16_RS05295 Genome accession   NZ_CP125396
Coordinates   1014158..1014460 (+) Length   100 a.a.
NCBI ID   WP_283147443.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC57     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1009158..1019460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK16_RS05270 (QMK16_05270) rpsR 1009520..1009780 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  QMK16_RS05275 (QMK16_05275) lon 1009841..1012216 (-) 2376 WP_002858084.1 endopeptidase La -
  QMK16_RS05280 (QMK16_05280) - 1012233..1012880 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  QMK16_RS05285 (QMK16_05285) fliW 1013041..1013430 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  QMK16_RS05290 (QMK16_05290) proC 1013430..1014161 (+) 732 WP_002858388.1 pyrroline-5-carboxylate reductase Machinery gene
  QMK16_RS05295 (QMK16_05295) ctsT 1014158..1014460 (+) 303 WP_283147443.1 hypothetical protein Machinery gene
  QMK16_RS05300 (QMK16_05300) - 1014457..1015119 (+) 663 WP_002858296.1 hypothetical protein -
  QMK16_RS05305 (QMK16_05305) - 1015116..1015568 (+) 453 WP_002859148.1 hypothetical protein -
  QMK16_RS05310 (QMK16_05310) hemD 1015565..1016194 (-) 630 WP_002858312.1 uroporphyrinogen-III synthase -
  QMK16_RS05315 (QMK16_05315) thiE 1016172..1016804 (-) 633 WP_002858441.1 thiamine phosphate synthase -
  QMK16_RS05320 (QMK16_05320) thiD 1016794..1017606 (-) 813 WP_002858043.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QMK16_RS05325 (QMK16_05325) - 1017603..1018289 (-) 687 WP_002858132.1 endonuclease III domain-containing protein -
  QMK16_RS05330 (QMK16_05330) - 1018286..1019047 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12146.22 Da        Isoelectric Point: 6.2957

>NTDB_id=831892 QMK16_RS05295 WP_283147443.1 1014158..1014460(+) (ctsT) [Campylobacter jejuni strain SKBC57]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKPQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=831892 QMK16_RS05295 WP_283147443.1 1014158..1014460(+) (ctsT) [Campylobacter jejuni strain SKBC57]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACCTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGACGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

98

100

0.98