Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   U0535_RS12095 Genome accession   NZ_CP139846
Coordinates   1902679..1903416 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Nord58     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1897679..1908416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0535_RS12080 (U0535_12080) clpC 1898137..1900710 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  U0535_RS12085 (U0535_12085) yfiH 1900840..1901567 (-) 728 Protein_1872 purine nucleoside phosphorylase YfiH -
  U0535_RS12090 (U0535_12090) rluD 1901564..1902544 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  U0535_RS12095 (U0535_12095) comL 1902679..1903416 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  U0535_RS12100 (U0535_12100) tnpA 1903607..1904065 (+) 459 WP_001550737.1 IS200/IS605 family transposase -
  U0535_RS12105 (U0535_12105) raiA 1904399..1904740 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  U0535_RS12110 (U0535_12110) pheL 1904844..1904891 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  U0535_RS12115 (U0535_12115) pheA 1904990..1906150 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  U0535_RS12120 (U0535_12120) tyrA 1906193..1907314 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  U0535_RS12125 (U0535_12125) aroF 1907325..1908395 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=831884 U0535_RS12095 WP_000197686.1 1902679..1903416(+) (comL) [Escherichia coli strain Nord58]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=831884 U0535_RS12095 WP_000197686.1 1902679..1903416(+) (comL) [Escherichia coli strain Nord58]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376