Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   QMK12_RS02800 Genome accession   NZ_CP125395
Coordinates   536862..537512 (-) Length   216 a.a.
NCBI ID   WP_283155623.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC94     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 531862..542512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK12_RS02765 (QMK12_02765) - 532240..533244 (+) 1005 WP_283155672.1 hypothetical protein -
  QMK12_RS02770 (QMK12_02770) tlyA 533241..534002 (+) 762 WP_283155621.1 TlyA family RNA methyltransferase -
  QMK12_RS02775 (QMK12_02775) ribF 533968..534822 (+) 855 WP_079862135.1 bifunctional riboflavin kinase/FAD synthetase -
  QMK12_RS02780 (QMK12_02780) cmoA 534809..535519 (+) 711 WP_079862136.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  QMK12_RS02785 (QMK12_02785) - 535509..535730 (-) 222 WP_079005306.1 EexN family lipoprotein -
  QMK12_RS02790 (QMK12_02790) - 535721..536161 (-) 441 WP_283155622.1 EexN family lipoprotein -
  QMK12_RS02795 (QMK12_02795) - 536219..536851 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  QMK12_RS02800 (QMK12_02800) CJE0566 536862..537512 (-) 651 WP_283155623.1 DNA/RNA non-specific endonuclease Regulator
  QMK12_RS02805 (QMK12_02805) nth 537509..538135 (-) 627 WP_088303741.1 endonuclease III -
  QMK12_RS02810 (QMK12_02810) peb4 538216..539037 (+) 822 WP_070316922.1 peptidylprolyl isomerase PEB4 -
  QMK12_RS02815 (QMK12_02815) fbaA 539037..540101 (+) 1065 WP_070316923.1 class II fructose-bisphosphate aldolase -
  QMK12_RS02820 (QMK12_02820) - 540196..541638 (+) 1443 WP_283155624.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25415.18 Da        Isoelectric Point: 9.8188

>NTDB_id=831860 QMK12_RS02800 WP_283155623.1 536862..537512(-) (CJE0566) [Campylobacter jejuni strain SKBC94]
MKIFIFSLAISLNIFALEPYKPSANFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKIEASNLKDKQIKKRPRFED
DTNIPKKYRTTWNDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWSEIEQRERSLALKFQSIEVLN
LILYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=831860 QMK12_RS02800 WP_283155623.1 536862..537512(-) (CJE0566) [Campylobacter jejuni strain SKBC94]
ATGAAAATTTTCATCTTTTCACTGGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTAATTTTTC
TTCTTATTTTAACAATATAAACTGTTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GTACAAAAGCCGTTGCTTATAAAATAGAAGCTTCAAATTTGAAAGATAAGCAAATTAAAAAACGGCCGCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAATGATTATAAAAACAGCGGCTACACGCGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCTCAAA
TAAATAATAAAATTTGGAGTGAAATCGAACAAAGAGAAAGAAGTTTAGCTTTAAAATTTCAAAGTATCGAAGTTTTAAAT
TTAATACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGTTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(23-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.036

91.204

0.63
  CJE1441 Campylobacter jejuni RM1221

68.02

91.204

0.62