Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   U0543_RS12360 Genome accession   NZ_CP139836
Coordinates   2568560..2569042 (-) Length   160 a.a.
NCBI ID   WP_322451551.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain B84     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2563560..2574042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0543_RS12320 (U0543_12320) - 2563596..2563979 (+) 384 WP_001123235.1 GNAT family N-acetyltransferase -
  U0543_RS12335 (U0543_12335) - 2564535..2564966 (-) 432 WP_000469967.1 GNAT family acetyltransferase -
  U0543_RS12340 (U0543_12340) - 2565097..2566612 (-) 1516 Protein_2413 acetyl-CoA hydrolase/transferase family protein -
  U0543_RS12345 (U0543_12345) - 2566648..2566776 (-) 129 WP_085940424.1 hypothetical protein -
  U0543_RS12350 (U0543_12350) - 2566804..2568261 (-) 1458 WP_000051217.1 ATP-binding protein -
  U0543_RS12355 (U0543_12355) - 2568279..2568587 (-) 309 WP_151725599.1 winged helix-turn-helix domain-containing protein -
  U0543_RS12360 (U0543_12360) chiS 2568560..2569042 (-) 483 WP_322451551.1 response regulator Regulator
  U0543_RS12365 (U0543_12365) - 2569698..2572046 (+) 2349 WP_000131196.1 Tex family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18303.15 Da        Isoelectric Point: 7.3624

>NTDB_id=831832 U0543_RS12360 WP_322451551.1 2568560..2569042(-) (chiS) [Acinetobacter baumannii strain B84]
MSLVVPAEHPETVHNETDRVERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGL
SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVREVRVRQANKLKWLASAHGL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=831832 U0543_RS12360 WP_322451551.1 2568560..2569042(-) (chiS) [Acinetobacter baumannii strain B84]
ATGAGTTTAGTTGTACCTGCTGAACATCCTGAAACCGTACATAACGAAACGGATCGTGTCGAGCGCATTTTAGTGGTCGA
TGACGATGTGCGTTTACGTACCCTCTTGCAACGTTTTTTGGAAGATAAAGGCTTTGTTGTAAAAACTGCCCATGATGCCT
CACAAATGGATCGTTTATTACAACGTGAGTTATTTTCACTTATCGTGCTCGACTTTATGTTGCCCGTTGAAGATGGTTTA
AGTATTTGTCGTCGTTTACGTCAGTCAAATATTGATACTCCAATTATCATGTTAACTGCACGTGGTAGTGACTCTGACCG
TATTGCTGGTCTTGAAGCCGGCGCAGATGACTATTTACCAAAACCATTTAACCCAAATGAACTTTTAGCACGTATTCGCG
CAGTATTGCGTCGTCAGGTACGTGAAGTTCGGGTGCGCCAAGCCAACAAGTTGAAGTGGTTAGCTTCGGCCCATGGTCTC
TAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(23-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

43.448

90.625

0.394