Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   QMK13_RS02840 Genome accession   NZ_CP125390
Coordinates   549511..550161 (-) Length   216 a.a.
NCBI ID   WP_044305891.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC9     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 544511..555161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK13_RS02805 (QMK13_02805) - 544889..545893 (+) 1005 WP_283152079.1 hypothetical protein -
  QMK13_RS02810 (QMK13_02810) tlyA 545890..546651 (+) 762 WP_283152038.1 TlyA family RNA methyltransferase -
  QMK13_RS02815 (QMK13_02815) ribF 546617..547471 (+) 855 WP_011812722.1 bifunctional riboflavin kinase/FAD synthetase -
  QMK13_RS02820 (QMK13_02820) cmoA 547458..548168 (+) 711 WP_079254181.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  QMK13_RS02825 (QMK13_02825) - 548158..548379 (-) 222 WP_072238629.1 EexN family lipoprotein -
  QMK13_RS02830 (QMK13_02830) - 548370..548810 (-) 441 WP_283152039.1 EexN family lipoprotein -
  QMK13_RS02835 (QMK13_02835) - 548868..549500 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  QMK13_RS02840 (QMK13_02840) CJE0566 549511..550161 (-) 651 WP_044305891.1 DNA/RNA non-specific endonuclease Regulator
  QMK13_RS02845 (QMK13_02845) nth 550158..550784 (-) 627 WP_002866467.1 endonuclease III -
  QMK13_RS02850 (QMK13_02850) peb4 550865..551686 (+) 822 WP_002892290.1 peptidylprolyl isomerase PEB4 -
  QMK13_RS02855 (QMK13_02855) fbaA 551686..552750 (+) 1065 WP_283152040.1 class II fructose-bisphosphate aldolase -
  QMK13_RS02860 (QMK13_02860) - 552845..554287 (+) 1443 WP_283152041.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25474.25 Da        Isoelectric Point: 9.8188

>NTDB_id=831832 QMK13_RS02840 WP_044305891.1 549511..550161(-) (CJE0566) [Campylobacter jejuni strain SKBC9]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFEN
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=831832 QMK13_RS02840 WP_044305891.1 549511..550161(-) (CJE0566) [Campylobacter jejuni strain SKBC9]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTGAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAAAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
TAATGCTTCTTTTAGTTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAATTGCTCAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63