Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   QMK10_RS07520 Genome accession   NZ_CP125388
Coordinates   1467803..1468984 (-) Length   393 a.a.
NCBI ID   WP_002936488.1    Uniprot ID   A0A5Z1H404
Organism   Campylobacter jejuni strain SKBC25     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1462803..1473984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK10_RS07490 (QMK10_07490) - 1463348..1463689 (+) 342 WP_002784057.1 hypothetical protein -
  QMK10_RS07495 (QMK10_07495) flgM 1463752..1463949 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  QMK10_RS07500 (QMK10_07500) - 1463991..1464425 (+) 435 WP_002779263.1 flagellar protein FlgN -
  QMK10_RS07505 (QMK10_07505) flgK 1464435..1466261 (+) 1827 WP_057100486.1 flagellar hook-associated protein FlgK -
  QMK10_RS07510 (QMK10_07510) - 1466278..1467042 (+) 765 WP_002936487.1 TIGR02757 family protein -
  QMK10_RS07515 (QMK10_07515) - 1467046..1467810 (+) 765 WP_002855301.1 TSUP family transporter -
  QMK10_RS07520 (QMK10_07520) ctsF 1467803..1468984 (-) 1182 WP_002936488.1 type II secretion system F family protein Machinery gene
  QMK10_RS07525 (QMK10_07525) ctsE 1468981..1470540 (-) 1560 WP_057100488.1 GspE/PulE family protein Machinery gene
  QMK10_RS07530 (QMK10_07530) ctsX 1470530..1471117 (-) 588 WP_002936491.1 hypothetical protein Machinery gene
  QMK10_RS07535 (QMK10_07535) ctsP 1471121..1471729 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  QMK10_RS07540 (QMK10_07540) ctsD 1471722..1473134 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK10_RS07545 (QMK10_07545) ctsR 1473112..1473423 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45794.38 Da        Isoelectric Point: 9.0938

>NTDB_id=831820 QMK10_RS07520 WP_002936488.1 1467803..1468984(-) (ctsF) [Campylobacter jejuni strain SKBC25]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=831820 QMK10_RS07520 WP_002936488.1 1467803..1468984(-) (ctsF) [Campylobacter jejuni strain SKBC25]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAAATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCCTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Z1H404

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99