Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   QMK10_RS07545 Genome accession   NZ_CP125388
Coordinates   1473112..1473423 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC25     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1468112..1478423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK10_RS07525 (QMK10_07525) ctsE 1468981..1470540 (-) 1560 WP_057100488.1 GspE/PulE family protein Machinery gene
  QMK10_RS07530 (QMK10_07530) ctsX 1470530..1471117 (-) 588 WP_002936491.1 hypothetical protein Machinery gene
  QMK10_RS07535 (QMK10_07535) ctsP 1471121..1471729 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  QMK10_RS07540 (QMK10_07540) ctsD 1471722..1473134 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK10_RS07545 (QMK10_07545) ctsR 1473112..1473423 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  QMK10_RS07550 (QMK10_07550) nifJ 1473447..1477007 (-) 3561 WP_002936499.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  QMK10_RS07555 (QMK10_07555) - 1477100..1477741 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=831825 QMK10_RS07545 WP_002862131.1 1473112..1473423(-) (ctsR) [Campylobacter jejuni strain SKBC25]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=831825 QMK10_RS07545 WP_002862131.1 1473112..1473423(-) (ctsR) [Campylobacter jejuni strain SKBC25]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99