Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QMK10_RS03435 Genome accession   NZ_CP125388
Coordinates   659165..659938 (+) Length   257 a.a.
NCBI ID   WP_002857196.1    Uniprot ID   A0AAD2Z1Q2
Organism   Campylobacter jejuni strain SKBC25     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 654165..664938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK10_RS03420 (QMK10_03420) - 655014..656948 (-) 1935 WP_283151776.1 ribonuclease R family protein -
  QMK10_RS03425 (QMK10_03425) ilvC 657067..658089 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  QMK10_RS03430 (QMK10_03430) - 658093..659175 (+) 1083 WP_283151777.1 divergent polysaccharide deacetylase family protein -
  QMK10_RS03435 (QMK10_03435) dprA 659165..659938 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  QMK10_RS03440 (QMK10_03440) ruvX 659935..660318 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX -
  QMK10_RS03445 (QMK10_03445) - 660347..661186 (+) 840 WP_283151808.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  QMK10_RS03450 (QMK10_03450) msrA 661362..661859 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  QMK10_RS03455 (QMK10_03455) ppa 661900..662418 (-) 519 WP_002855031.1 inorganic diphosphatase -
  QMK10_RS03460 (QMK10_03460) adk 662428..663006 (-) 579 WP_002855137.1 adenylate kinase -
  QMK10_RS03465 (QMK10_03465) aspS 663003..664754 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28740.54 Da        Isoelectric Point: 7.6510

>NTDB_id=831806 QMK10_RS03435 WP_002857196.1 659165..659938(+) (dprA) [Campylobacter jejuni strain SKBC25]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SIAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=831806 QMK10_RS03435 WP_002857196.1 659165..659938(+) (dprA) [Campylobacter jejuni strain SKBC25]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAACCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCCCATCTTTGTGTGGTAAGTGGTGGTGCTTTGGGTGTGGATATCACCGCA
AGTATAGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATCGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.828

99.611

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459