Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   QMK10_RS03240 Genome accession   NZ_CP125388
Coordinates   617269..617919 (-) Length   216 a.a.
NCBI ID   WP_004316452.1    Uniprot ID   A0A5Z5A9R1
Organism   Campylobacter jejuni strain SKBC25     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 612269..622919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK10_RS03205 (QMK10_03205) - 612646..613650 (+) 1005 WP_074469325.1 hypothetical protein -
  QMK10_RS03210 (QMK10_03210) tlyA 613647..614408 (+) 762 WP_004316456.1 TlyA family RNA methyltransferase -
  QMK10_RS03215 (QMK10_03215) ribF 614374..615228 (+) 855 WP_002876662.1 bifunctional riboflavin kinase/FAD synthetase -
  QMK10_RS03220 (QMK10_03220) cmoA 615215..615925 (+) 711 WP_074469304.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  QMK10_RS03225 (QMK10_03225) - 615915..616136 (-) 222 WP_072238629.1 EexN family lipoprotein -
  QMK10_RS03230 (QMK10_03230) - 616127..616568 (-) 442 Protein_624 EexN family lipoprotein -
  QMK10_RS03235 (QMK10_03235) - 616626..617258 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  QMK10_RS03240 (QMK10_03240) CJE0566 617269..617919 (-) 651 WP_004316452.1 DNA/RNA non-specific endonuclease Regulator
  QMK10_RS03245 (QMK10_03245) nth 617916..618542 (-) 627 WP_002866467.1 endonuclease III -
  QMK10_RS03250 (QMK10_03250) peb4 618623..619444 (+) 822 WP_002892290.1 peptidylprolyl isomerase PEB4 -
  QMK10_RS03255 (QMK10_03255) fbaA 619444..620508 (+) 1065 WP_002880322.1 class II fructose-bisphosphate aldolase -
  QMK10_RS03260 (QMK10_03260) - 620603..622045 (+) 1443 WP_004316451.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25449.28 Da        Isoelectric Point: 9.8868

>NTDB_id=831805 QMK10_RS03240 WP_004316452.1 617269..617919(-) (CJE0566) [Campylobacter jejuni strain SKBC25]
MKIFIFLLAISLNIFALESYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVKASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPLYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=831805 QMK10_RS03240 WP_004316452.1 617269..617919(-) (CJE0566) [Campylobacter jejuni strain SKBC25]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAATCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAAAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACTATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Z5A9R1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

68.528

91.204

0.625