Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   QMK14_RS02875 Genome accession   NZ_CP125387
Coordinates   558975..559625 (-) Length   216 a.a.
NCBI ID   WP_070316920.1    Uniprot ID   A0A5T1QHS5
Organism   Campylobacter jejuni strain SKBC102     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 553975..564625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK14_RS02840 (QMK14_02840) - 554353..555357 (+) 1005 WP_079862141.1 hypothetical protein -
  QMK14_RS02845 (QMK14_02845) tlyA 555354..556115 (+) 762 WP_070316916.1 TlyA family RNA methyltransferase -
  QMK14_RS02850 (QMK14_02850) ribF 556081..556935 (+) 855 WP_079862135.1 bifunctional riboflavin kinase/FAD synthetase -
  QMK14_RS02855 (QMK14_02855) cmoA 556922..557632 (+) 711 WP_079862136.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  QMK14_RS02860 (QMK14_02860) - 557622..557843 (-) 222 WP_079005306.1 EexN family lipoprotein -
  QMK14_RS02865 (QMK14_02865) - 557834..558274 (-) 441 WP_096703010.1 EexN family lipoprotein -
  QMK14_RS02870 (QMK14_02870) - 558332..558964 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  QMK14_RS02875 (QMK14_02875) CJE0566 558975..559625 (-) 651 WP_070316920.1 DNA/RNA non-specific endonuclease Regulator
  QMK14_RS02880 (QMK14_02880) nth 559622..560248 (-) 627 WP_070316921.1 endonuclease III -
  QMK14_RS02885 (QMK14_02885) peb4 560329..561150 (+) 822 WP_070316922.1 peptidylprolyl isomerase PEB4 -
  QMK14_RS02890 (QMK14_02890) fbaA 561150..562214 (+) 1065 WP_070316923.1 class II fructose-bisphosphate aldolase -
  QMK14_RS02895 (QMK14_02895) - 562309..563751 (+) 1443 WP_070316924.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25374.13 Da        Isoelectric Point: 9.8188

>NTDB_id=831778 QMK14_RS02875 WP_070316920.1 558975..559625(-) (CJE0566) [Campylobacter jejuni strain SKBC102]
MKIFIFSLAISLNIFALEPYKPSANFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKIEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWSEIEQRERSLALKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=831778 QMK14_RS02875 WP_070316920.1 558975..559625(-) (CJE0566) [Campylobacter jejuni strain SKBC102]
ATGAAAATTTTCATCTTTTCACTAGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTAATTTTTC
TTCTTATTTTAACAATATAAACTGTTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GTACAAAAGCCGTTGCTTATAAAATAGAAGCTTCAAATTTGAAAGATAAGCAAATTAAAAAACGGCCGCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGCGGCTACACGCGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCTCAAA
TAAATAATAAAATTTGGAGTGAAATCGAACAAAGAGAAAGAAGTTTAGCTTTAAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGTTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(23-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1QHS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63