Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   QMK08_RS03245 Genome accession   NZ_CP125386
Coordinates   626511..626948 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain SKBC41     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 621511..631948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK08_RS03225 (QMK08_03225) kdpD 621999..623930 (+) 1932 WP_002877682.1 sensor histidine kinase KdpD -
  QMK08_RS03230 (QMK08_03230) uvrB 623925..625898 (-) 1974 WP_014516973.1 excinuclease ABC subunit UvrB -
  QMK08_RS03235 (QMK08_03235) - 626052..626282 (+) 231 WP_002852327.1 hypothetical protein -
  QMK08_RS03240 (QMK08_03240) - 626272..626514 (+) 243 WP_002854947.1 hypothetical protein -
  QMK08_RS03245 (QMK08_03245) Cj0683 626511..626948 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QMK08_RS03250 (QMK08_03250) priA 626930..628783 (+) 1854 WP_283146541.1 primosomal protein N' -
  QMK08_RS03255 (QMK08_03255) - 628776..629534 (-) 759 WP_002877674.1 CTP:phosphoglutamine cytidylyltransferase -
  QMK08_RS03260 (QMK08_03260) - 629536..630138 (-) 603 WP_002877673.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=831753 QMK08_RS03245 WP_002852324.1 626511..626948(+) (Cj0683) [Campylobacter jejuni strain SKBC41]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=831753 QMK08_RS03245 WP_002852324.1 626511..626948(+) (Cj0683) [Campylobacter jejuni strain SKBC41]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1