Detailed information NTG0083174

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L6418_RS12090
• Genome accession: NZ_AP023423
• Coordinates: 2492850..2493719 (+)
• Length: 289 a.a.
• NCBI ID: WP_237247175.1
• Uniprot ID: A0AAN1XC60
• Organism: Sideroxyarcus emersonii strain MIZ01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2487850..2498719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6418_RS12075 (MIZ01_2465)	lgt	2489147..2489950 (+)	804	WP_237247172.1	prolipoprotein diacylglyceryl transferase	-
L6418_RS12080 (MIZ01_2466)	-	2490050..2491339 (+)	1290	WP_237247173.1	HlyC/CorC family transporter	-
L6418_RS12085 (MIZ01_2467)	pilC	2491447..2492667 (+)	1221	WP_237247174.1	type II secretion system F family protein	Machinery gene
L6418_RS12090 (MIZ01_2468)	pilD	2492850..2493719 (+)	870	WP_237247175.1	A24 family peptidase	Machinery gene
L6418_RS12095 (MIZ01_2469)	coaE	2493716..2494327 (+)	612	WP_237247176.1	dephospho-CoA kinase	-
L6418_RS12100 (MIZ01_2470)	zapD	2494389..2495147 (+)	759	WP_237247177.1	cell division protein ZapD	-
L6418_RS12105 (MIZ01_2471)	-	2495144..2495329 (+)	186	WP_237247178.1	DNA gyrase inhibitor YacG	-
L6418_RS12110 (MIZ01_2472)	-	2495311..2496255 (-)	945	WP_237247179.1	Nudix family hydrolase	-
L6418_RS12115 (MIZ01_2473)	-	2496242..2497105 (-)	864	WP_237247180.1	ATP-binding protein	-
L6418_RS12120 (MIZ01_2474)	argJ	2497409..2498626 (-)	1218	WP_237247181.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31088.96 Da
• Isoelectric Point: 7.6215

>NTDB_id=83174 L6418_RS12090 WP_237247175.1 2492850..2493719(+) (pilD) [Sideroxyarcus emersonii strain MIZ01]
MTELFQLFKSEPLVFAIACGLLGLVVGSFLNVVIHRLPRMMERDWHAQCAELNGQSPEPAPRYNLLVPRSACPHCGHAIS
AAENIPVLSYLLLRGKCKGCGAAISPRYPTVEAVSGILSAYAAWHFGFGIAAVAALVFIWALLALTFIDFDTQLLPDDIT
LPLLWLGLLLNLNGVYTSLPNAVIGAAAGYLCLWSVYWAFKLTTGKEGMGYGDFKLLAVIGAWLGWQLLPLVILLSSLVG
AVVGIALILFAKHGRNIPIPFGPYLAGGGLIALFWGLALTQSYLQLLAL

Nucleotide

• Length: 870 bp

>NTDB_id=83174 L6418_RS12090 WP_237247175.1 2492850..2493719(+) (pilD) [Sideroxyarcus emersonii strain MIZ01]
ATGACCGAACTATTCCAGCTATTCAAATCCGAACCCCTCGTATTCGCCATTGCCTGCGGCCTGCTGGGCCTGGTGGTCGG
CAGCTTTCTCAACGTCGTCATCCACCGCCTGCCCAGGATGATGGAACGCGATTGGCACGCACAATGCGCCGAGCTGAACG
GGCAATCGCCTGAGCCAGCCCCGCGCTACAACCTGCTCGTACCCCGCTCCGCCTGTCCGCATTGCGGGCACGCCATCAGC
GCGGCAGAGAACATCCCGGTTCTGAGCTACCTGTTGCTGCGCGGCAAATGCAAAGGCTGCGGAGCCGCCATCTCGCCGCG
CTACCCCACCGTCGAAGCCGTCAGCGGCATCCTCAGCGCCTATGCCGCCTGGCATTTCGGTTTTGGCATTGCCGCAGTTG
CGGCCCTCGTATTCATATGGGCACTGCTCGCACTCACCTTCATCGATTTCGATACCCAGCTGCTGCCGGATGACATCACC
CTGCCGCTGCTCTGGCTCGGTCTGCTGCTCAACCTCAATGGCGTCTATACTTCATTACCCAATGCCGTCATCGGTGCGGC
TGCAGGCTATCTCTGCCTGTGGAGCGTGTACTGGGCATTCAAGCTCACTACCGGCAAGGAAGGCATGGGTTACGGCGATT
TCAAGCTGCTGGCCGTCATCGGGGCATGGCTGGGCTGGCAGCTGTTGCCGCTGGTCATCCTGCTCTCTTCCCTGGTCGGT
GCCGTGGTCGGCATCGCGCTCATCCTGTTCGCCAAACATGGCCGCAATATCCCCATCCCATTCGGGCCTTACCTCGCAGG
GGGCGGATTGATCGCGCTGTTCTGGGGGCTGGCACTGACGCAAAGTTACCTGCAGTTGCTGGCCCTGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.77	97.924	0.536
pilD	Vibrio campbellii strain DS40M4	52.128	97.578	0.509
pilD	Acinetobacter baumannii D1279779	49.301	98.962	0.488
pilD	Acinetobacter nosocomialis M2	48.951	98.962	0.484
pilD	Neisseria gonorrhoeae MS11	49.802	87.543	0.436