Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   QMK09_RS03165 Genome accession   NZ_CP125383
Coordinates   591926..592576 (-) Length   216 a.a.
NCBI ID   WP_052794385.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 586926..597576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK09_RS03130 (QMK09_03130) - 587304..588308 (+) 1005 WP_011049741.1 membrane protein -
  QMK09_RS03135 (QMK09_03135) tlyA 588305..589066 (+) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  QMK09_RS03140 (QMK09_03140) ribF 589032..589886 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  QMK09_RS03145 (QMK09_03145) cmoA 589873..590583 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  QMK09_RS03150 (QMK09_03150) - 590573..590794 (-) 222 WP_002859102.1 EexN family lipoprotein -
  QMK09_RS03155 (QMK09_03155) - 590791..591225 (-) 435 WP_052794386.1 EexN family lipoprotein -
  QMK09_RS03160 (QMK09_03160) - 591283..591915 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  QMK09_RS03165 (QMK09_03165) CJE0566 591926..592576 (-) 651 WP_052794385.1 DNA/RNA non-specific endonuclease Regulator
  QMK09_RS03170 (QMK09_03170) nth 592573..593199 (-) 627 WP_002852225.1 endonuclease III -
  QMK09_RS03175 (QMK09_03175) peb4 593280..594101 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  QMK09_RS03180 (QMK09_03180) fbaA 594101..595165 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  QMK09_RS03185 (QMK09_03185) - 595260..596702 (+) 1443 WP_002875368.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25442.08 Da        Isoelectric Point: 9.6573

>NTDB_id=831724 QMK09_RS03165 WP_052794385.1 591926..592576(-) (CJE0566) [Campylobacter jejuni strain SKBC1]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKNRQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=831724 QMK09_RS03165 WP_052794385.1 591926..592576(-) (CJE0566) [Campylobacter jejuni strain SKBC1]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTGGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAAATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634