Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   L6418_RS11770 Genome accession   NZ_AP023423
Coordinates   2442106..2443467 (-) Length   453 a.a.
NCBI ID   WP_237247114.1    Uniprot ID   -
Organism   Sideroxyarcus emersonii strain MIZ01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2437106..2448467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6418_RS11755 (MIZ01_2401) - 2437242..2438387 (-) 1146 WP_237247111.1 ribonucleotide-diphosphate reductase subunit beta -
  L6418_RS11760 (MIZ01_2402) - 2438501..2441338 (-) 2838 WP_237247112.1 ribonucleoside-diphosphate reductase subunit alpha -
  L6418_RS11765 (MIZ01_2403) ampD 2441573..2442109 (-) 537 WP_237247113.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  L6418_RS11770 (MIZ01_2404) pilR 2442106..2443467 (-) 1362 WP_237247114.1 sigma-54 dependent transcriptional regulator Regulator
  L6418_RS11775 (MIZ01_2405) - 2443464..2445089 (-) 1626 WP_237247115.1 nitrogen regulation protein NR(II) -
  L6418_RS11780 (MIZ01_2406) - 2445095..2445325 (-) 231 WP_237247116.1 PP0621 family protein -
  L6418_RS11785 (MIZ01_2407) - 2445487..2445717 (-) 231 WP_237247117.1 hypothetical protein -
  L6418_RS11790 (MIZ01_2408) - 2446111..2447574 (+) 1464 WP_237247118.1 hypothetical protein -
  L6418_RS11795 (MIZ01_2409) - 2447574..2447774 (+) 201 WP_237247119.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49974.23 Da        Isoelectric Point: 5.9872

>NTDB_id=83172 L6418_RS11770 WP_237247114.1 2442106..2443467(-) (pilR) [Sideroxyarcus emersonii strain MIZ01]
MKNENKANPRVLVVDDEADILELLELALSRMGLDVARASNVKQARQLLDAETFDLCLTDMRIPDGDGLEVVRHINERGMD
VPVAVITAHGNLENAVAALKAGAFDYLSKPVALDQLRTLVASALKLPAANARARDGGRILSGNSPAMAQVRELIGRVARS
QAPVHISGESGSGKELAARLIVEKSARNEQAFVAVNCGAIPENLMESEFFGYRKGAFTGADKDKEGFFQTANHGTLLLDE
VADLPMVMQVKLLRAIQEKKVRRVGATQEESVDVRILSATHRDLGKCVQQGTFRQDLYYRLNVISIHMPSLREMREDVPQ
IANQILERLRGDSPARFSPQALEALMRYDFPGNVREMENIIERSLALCQEGVIMPADLQLMPMSAAQTEEASGGAGKYPL
TDYLDRIEREAILEALRQTHFNRTAAAKILGVTFRALRYRMERLSITDKDGAD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=83172 L6418_RS11770 WP_237247114.1 2442106..2443467(-) (pilR) [Sideroxyarcus emersonii strain MIZ01]
ATGAAAAATGAAAATAAGGCCAATCCCCGGGTTCTTGTGGTGGATGATGAGGCGGATATATTGGAATTGCTGGAACTGGC
CCTAAGCCGCATGGGGCTGGATGTGGCCAGGGCAAGCAATGTGAAGCAGGCCAGGCAGCTTCTGGACGCTGAAACATTCG
ACTTGTGCCTGACGGACATGCGTATTCCTGACGGTGATGGGCTTGAGGTGGTGCGCCATATCAACGAGCGCGGCATGGAT
GTCCCGGTGGCGGTAATCACTGCACATGGCAATCTGGAAAACGCGGTGGCGGCACTCAAGGCGGGGGCATTTGACTATCT
GTCCAAGCCGGTGGCGCTGGATCAATTGCGTACACTGGTTGCCTCTGCGCTCAAATTGCCTGCCGCTAATGCGAGAGCGA
GGGATGGCGGGCGTATTTTGTCGGGCAATTCACCGGCCATGGCCCAAGTGCGCGAATTGATAGGGCGGGTGGCGCGTAGC
CAGGCCCCAGTGCACATCAGTGGTGAATCGGGCAGCGGGAAGGAGTTGGCTGCCCGCCTGATCGTGGAAAAAAGCGCGCG
TAACGAGCAAGCGTTCGTTGCGGTCAACTGTGGCGCGATCCCGGAAAACCTGATGGAAAGCGAATTCTTCGGTTATCGAA
AAGGCGCATTCACAGGTGCGGACAAGGATAAAGAGGGGTTCTTCCAGACGGCAAATCATGGAACCTTGCTGCTGGACGAG
GTAGCTGACCTGCCGATGGTGATGCAGGTCAAATTGTTGCGGGCCATCCAGGAAAAGAAAGTGCGCCGGGTAGGTGCGAC
CCAGGAGGAATCGGTGGATGTGCGTATCCTGAGTGCAACCCATCGCGATCTGGGGAAGTGCGTGCAACAGGGTACATTCA
GGCAGGATCTTTATTATCGACTGAACGTCATTTCTATCCACATGCCCTCTCTGCGAGAAATGCGCGAGGATGTGCCGCAA
ATCGCAAATCAGATTCTGGAGCGTCTGCGCGGAGATTCCCCTGCCCGCTTTTCGCCGCAAGCTCTGGAAGCGCTGATGCG
CTACGACTTCCCCGGAAACGTGCGGGAGATGGAGAATATCATCGAGCGTTCATTGGCCCTGTGTCAGGAAGGGGTGATTA
TGCCTGCCGATTTGCAATTGATGCCGATGTCGGCGGCGCAGACCGAAGAGGCGAGCGGCGGAGCGGGAAAGTACCCGCTC
ACCGACTATCTTGACAGGATTGAGCGGGAGGCGATACTGGAGGCGCTGCGTCAGACCCACTTCAATCGCACTGCCGCTGC
CAAGATTCTGGGGGTGACGTTCCGTGCCTTGCGGTATCGCATGGAGCGACTGTCAATTACCGACAAGGACGGCGCCGATT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-120)

Bacterial regulatory protein, Fis family (HTH_8)

(404-443)

Sigma-54 interaction domain (Sigma54_activat)

(141-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.864

97.13

0.572
  pilR Acinetobacter baumannii strain A118

45.652

100

0.464

Multiple sequence alignment