Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QMK54_RS26815 Genome accession   NZ_CP125380
Coordinates   6039475..6040812 (+) Length   445 a.a.
NCBI ID   WP_110657267.1    Uniprot ID   -
Organism   Pseudomonas sp. P5_109     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6034475..6045812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK54_RS26790 (QMK54_26770) pgeF 6035837..6036562 (-) 726 WP_320401602.1 peptidoglycan editing factor PgeF -
  QMK54_RS26795 (QMK54_26775) rluD 6036559..6037521 (-) 963 WP_008052092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QMK54_RS26800 (QMK54_26780) - 6037673..6038695 (+) 1023 WP_110657273.1 outer membrane protein assembly factor BamD -
  QMK54_RS26805 (QMK54_26785) - 6038896..6039129 (+) 234 WP_110657271.1 PP0621 family protein -
  QMK54_RS26810 - 6039200..6039478 (+) 279 Protein_5264 hypothetical protein -
  QMK54_RS26815 (QMK54_26790) pilR 6039475..6040812 (+) 1338 WP_110657267.1 sigma-54-dependent transcriptional regulator Regulator
  QMK54_RS26820 (QMK54_26795) thiO 6040915..6042015 (-) 1101 WP_223594596.1 glycine oxidase ThiO -
  QMK54_RS26825 (QMK54_26800) - 6042072..6042473 (-) 402 WP_110657263.1 type IV pilin protein -
  QMK54_RS26830 (QMK54_26805) - 6042488..6042874 (-) 387 WP_320401603.1 hypothetical protein -
  QMK54_RS26835 (QMK54_26810) - 6042861..6043340 (-) 480 WP_320401604.1 PilX N-terminal domain-containing pilus assembly protein -
  QMK54_RS26840 (QMK54_26815) - 6043351..6044058 (-) 708 WP_110661951.1 PilW family protein -
  QMK54_RS26845 (QMK54_26820) pilV 6044055..6044504 (-) 450 WP_110661950.1 type IV pilus modification protein PilV -
  QMK54_RS26850 (QMK54_26825) - 6044501..6044974 (-) 474 WP_110661949.1 GspH/FimT family pseudopilin -
  QMK54_RS26855 (QMK54_26830) - 6045105..6045644 (+) 540 WP_110661948.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49917.35 Da        Isoelectric Point: 7.4846

>NTDB_id=831683 QMK54_RS26815 WP_110657267.1 6039475..6040812(+) (pilR) [Pseudomonas sp. P5_109]
MNTRPRQKVLIVDDEPDIRELLEITLGRMKLETFNARNVGEAQSLLKRETFDLCLTDMQLPDGTGLELVQHIQQRHPQVQ
VAMITAYASLETAINVLKAGAFDFLTKPVDLTRLRELVTSALVLPVRGVGIDRRLLGDSLPMRNLRKHISKLASSHATVY
ISGESGSGKELVARLIHDQSPRANQPFIPINCAAIPSELLESEFFGHRKGSFSGAIEDKPGLFQTAHGGTLLLDEVADLP
LTMQVKLLRAIQEKAVRSVGGQQEVAVDVRILCATHKDLGAEVAAGRFRHDLYYRLNVIELRVPPLRERRDDIEMLANYI
LKRLAADSGQPATRLRPQALDALKSYRFPGNVRELENMLERAHTLCENNQIEAGDLRLAEGNCGAESGVPDLTRIDNLET
YLENVERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKFGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=831683 QMK54_RS26815 WP_110657267.1 6039475..6040812(+) (pilR) [Pseudomonas sp. P5_109]
TTGAACACGAGACCACGGCAAAAAGTCTTGATCGTCGATGACGAACCAGACATTCGCGAACTCCTGGAAATCACCCTGGG
AAGGATGAAACTGGAGACGTTCAACGCCCGCAACGTCGGCGAAGCGCAATCCCTGCTAAAACGCGAAACCTTCGATCTAT
GCCTGACCGACATGCAGTTGCCGGATGGTACCGGCCTGGAGTTGGTGCAACACATCCAGCAACGCCACCCTCAGGTCCAG
GTGGCAATGATCACCGCTTACGCCAGTCTCGAAACCGCAATCAACGTGCTCAAGGCCGGGGCGTTCGACTTCCTGACCAA
ACCGGTGGACCTTACGCGCCTGCGTGAACTGGTCACCAGCGCCCTGGTGCTTCCTGTCCGCGGGGTCGGCATCGATCGTC
GCTTGCTGGGCGACTCATTGCCCATGCGCAACCTGCGCAAACACATCAGCAAACTGGCCAGCAGCCATGCGACGGTCTAC
ATCAGTGGAGAATCCGGTAGCGGCAAGGAGTTGGTCGCGCGCCTGATCCATGATCAAAGCCCTCGCGCCAATCAGCCGTT
CATCCCGATCAACTGCGCGGCGATTCCCTCCGAACTGTTGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGTTTCAGCG
GCGCTATCGAAGACAAACCCGGCCTGTTCCAGACGGCACACGGCGGTACCCTGCTGCTCGACGAAGTGGCTGACCTGCCG
TTGACCATGCAAGTCAAACTGCTGCGCGCGATTCAGGAGAAAGCCGTACGCAGTGTCGGCGGACAGCAGGAAGTGGCGGT
GGATGTGCGCATTCTCTGCGCCACCCACAAGGACCTTGGCGCTGAAGTCGCCGCCGGACGATTTCGCCATGACCTTTACT
ACCGCTTGAACGTGATCGAACTCCGGGTACCGCCCTTGCGCGAGCGTCGTGATGACATCGAAATGCTCGCCAACTACATA
CTCAAGCGACTGGCCGCCGATTCCGGTCAACCCGCGACGAGACTCCGCCCCCAAGCCCTCGATGCACTGAAAAGCTATCG
CTTCCCGGGTAATGTGCGGGAACTGGAAAACATGCTCGAACGAGCGCACACATTGTGTGAGAACAATCAGATCGAAGCCG
GCGACCTGCGCCTGGCTGAAGGCAACTGTGGGGCTGAAAGTGGCGTGCCGGACCTGACCCGGATCGACAACCTGGAAACC
TACCTGGAAAACGTCGAACGCCAACTGCTGCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGCTCAGCG
GTTGAATCTGTCATTCAGGTCGATGCGTTACAGGCTCAAGAAGTTTGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

75.395

99.551

0.751
  pilR Acinetobacter baumannii strain A118

47.609

100

0.492