Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QMK54_RS23655 Genome accession   NZ_CP125380
Coordinates   5353398..5354033 (-) Length   211 a.a.
NCBI ID   WP_110660228.1    Uniprot ID   -
Organism   Pseudomonas sp. P5_109     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5348398..5359033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK54_RS23625 (QMK54_23605) murB 5349512..5350531 (-) 1020 WP_223593574.1 UDP-N-acetylmuramate dehydrogenase -
  QMK54_RS23630 (QMK54_23610) - 5350528..5350992 (-) 465 WP_320401445.1 low molecular weight protein-tyrosine-phosphatase -
  QMK54_RS23635 (QMK54_23615) kdsB 5350992..5351756 (-) 765 WP_320401446.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMK54_RS23640 (QMK54_23620) - 5351753..5351938 (-) 186 WP_003179363.1 Trm112 family protein -
  QMK54_RS23645 (QMK54_23625) lpxK 5351963..5352973 (-) 1011 WP_320401447.1 tetraacyldisaccharide 4'-kinase -
  QMK54_RS23650 (QMK54_23630) - 5352973..5353401 (-) 429 WP_223593586.1 ExbD/TolR family protein -
  QMK54_RS23655 (QMK54_23635) exbB 5353398..5354033 (-) 636 WP_110660228.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMK54_RS23660 (QMK54_23640) comA 5354132..5356366 (-) 2235 WP_320401448.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMK54_RS23665 (QMK54_23645) - 5356501..5357016 (+) 516 WP_320401449.1 DUF2062 domain-containing protein -
  QMK54_RS23670 (QMK54_23650) - 5357169..5357948 (-) 780 WP_223593593.1 ABC transporter permease -
  QMK54_RS23675 (QMK54_23655) - 5357945..5358877 (-) 933 WP_223593603.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.02 Da        Isoelectric Point: 7.3613

>NTDB_id=831678 QMK54_RS23655 WP_110660228.1 5353398..5354033(-) (exbB) [Pseudomonas sp. P5_109]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAQRVIHELERYVSALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLLRRIDELVVGMEQEAIKLVEVVQGDRDVDLSGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=831678 QMK54_RS23655 WP_110660228.1 5353398..5354033(-) (exbB) [Pseudomonas sp. P5_109]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCCATCGTCGC
CGAGCGTCTCTGGACGCTGCGCGCCAGCCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAGCTCAATAAAGACAAACTCAAGGAGCTGCGCGCCAACTCGCCTTTGGGCGAGATCCTGGCGGCGGGCCTCGCCAAC
TCCAAACATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCTCAACGGGTCATCCATGAGCTTGAACGCTATGT
CAGCGCCCTGGGCACCATCGCCGCCATGGCGCCATTGCTGGGCCTGCTGGGTACAGTGCTGGGCATGATCGACATTTTCA
GCGCATTCACGGGCTCGGGCATGACCACCAACGCCTCCGTTCTGGCGGGTGGTATTTCCAAGGCCCTGATCACCACGGCT
GCGGGCCTGATGGTGGGTATCCCATCGGTGTTCTTCCACCGTTTCCTGCTACGGCGTATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTGGTGCAGGGCGACCGTGATGTGGATCTGTCCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839