Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QMK53_RS26025 Genome accession   NZ_CP125379
Coordinates   5839934..5840569 (+) Length   211 a.a.
NCBI ID   WP_178082110.1    Uniprot ID   A0A2N7RES6
Organism   Pseudomonas sp. P8_139     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5834934..5845569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK53_RS26005 (QMK53_25995) - 5835081..5836013 (+) 933 WP_102355386.1 ABC transporter ATP-binding protein -
  QMK53_RS26010 (QMK53_26000) - 5836010..5836789 (+) 780 WP_008087860.1 ABC transporter permease -
  QMK53_RS26015 (QMK53_26005) - 5836944..5837462 (-) 519 WP_025112995.1 DUF2062 domain-containing protein -
  QMK53_RS26020 (QMK53_26010) comA 5837598..5839832 (+) 2235 WP_320328807.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMK53_RS26025 (QMK53_26015) exbB 5839934..5840569 (+) 636 WP_178082110.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMK53_RS26030 (QMK53_26020) - 5840566..5840994 (+) 429 WP_102355390.1 ExbD/TolR family protein -
  QMK53_RS26035 (QMK53_26025) lpxK 5840994..5842004 (+) 1011 WP_320328806.1 tetraacyldisaccharide 4'-kinase -
  QMK53_RS26040 (QMK53_26030) - 5842026..5842211 (+) 186 WP_003174668.1 Trm112 family protein -
  QMK53_RS26045 (QMK53_26035) kdsB 5842208..5842972 (+) 765 WP_102355392.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMK53_RS26050 (QMK53_26040) - 5842972..5843436 (+) 465 WP_016986041.1 low molecular weight protein-tyrosine-phosphatase -
  QMK53_RS26055 (QMK53_26045) murB 5843433..5844452 (+) 1020 WP_320328805.1 UDP-N-acetylmuramate dehydrogenase -
  QMK53_RS26060 (QMK53_26050) - 5844694..5845164 (+) 471 WP_102355394.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22945.05 Da        Isoelectric Point: 6.8768

>NTDB_id=831665 QMK53_RS26025 WP_178082110.1 5839934..5840569(+) (exbB) [Pseudomonas sp. P8_139]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRVNSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=831665 QMK53_RS26025 WP_178082110.1 5839934..5840569(+) (exbB) [Pseudomonas sp. P8_139]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAAGAAAAACTCAAGGAGTTGCGCGTCAACTCGCCGCTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCGCGGGTGATTCACGAGCTCGAACGCTACGT
CAACGCGCTGGGCACCATCGCCGCCATGTCGCCGTTGCTGGGCCTGTTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCACCGGCTCCGGCATGACCACCAATGCTTCGGTACTGGCTGGCGGTATCTCCAAGGCGCTGATCACTACGGCG
GCGGGCCTGATGGTGGGTATCCCGTCGGTGTTCTTCCACCGGTTCCTGCAACGCCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7RES6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834