Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QMK53_RS26020 Genome accession   NZ_CP125379
Coordinates   5837598..5839832 (+) Length   744 a.a.
NCBI ID   WP_320328807.1    Uniprot ID   -
Organism   Pseudomonas sp. P8_139     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5832598..5844832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK53_RS25995 (QMK53_25985) - 5833622..5834281 (+) 660 WP_102355384.1 transglutaminase-like domain-containing protein -
  QMK53_RS26000 (QMK53_25990) - 5834325..5834948 (+) 624 WP_102355385.1 glutathione S-transferase family protein -
  QMK53_RS26005 (QMK53_25995) - 5835081..5836013 (+) 933 WP_102355386.1 ABC transporter ATP-binding protein -
  QMK53_RS26010 (QMK53_26000) - 5836010..5836789 (+) 780 WP_008087860.1 ABC transporter permease -
  QMK53_RS26015 (QMK53_26005) - 5836944..5837462 (-) 519 WP_025112995.1 DUF2062 domain-containing protein -
  QMK53_RS26020 (QMK53_26010) comA 5837598..5839832 (+) 2235 WP_320328807.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMK53_RS26025 (QMK53_26015) exbB 5839934..5840569 (+) 636 WP_178082110.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMK53_RS26030 (QMK53_26020) - 5840566..5840994 (+) 429 WP_102355390.1 ExbD/TolR family protein -
  QMK53_RS26035 (QMK53_26025) lpxK 5840994..5842004 (+) 1011 WP_320328806.1 tetraacyldisaccharide 4'-kinase -
  QMK53_RS26040 (QMK53_26030) - 5842026..5842211 (+) 186 WP_003174668.1 Trm112 family protein -
  QMK53_RS26045 (QMK53_26035) kdsB 5842208..5842972 (+) 765 WP_102355392.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMK53_RS26050 (QMK53_26040) - 5842972..5843436 (+) 465 WP_016986041.1 low molecular weight protein-tyrosine-phosphatase -
  QMK53_RS26055 (QMK53_26045) murB 5843433..5844452 (+) 1020 WP_320328805.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 82049.28 Da        Isoelectric Point: 10.1528

>NTDB_id=831664 QMK53_RS26020 WP_320328807.1 5837598..5839832(+) (comA) [Pseudomonas sp. P8_139]
MRTGMMALAAGLLVVVFLPVLPPVGLLMLLPVVGLMLLPFRSYPLAFLLFGFTWACVSAQWALNDRLPQPLDGETRWIEG
RVVGLPQSSDGVVRFELADARSRHATLPSLMRLAWYAGPPLNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGQRLAEASWAWRDSIRQRLLEVDAQGRGGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGLWPLRWPWLPWACGLAFAAALGYGVLAGFEVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNAVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGSRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSFVVLPPAL
LGTALLPVPYVGEGLLWLAGGLIDVLFRGLALIAGQWPAWIPASVSWWVWMLGSLGAVMLLLPRGVPMRSLGWPLLLMLV
VPPRERLPEDVADVWQLDVGQGLAILIRTRHHAVLYDAGPRFGDFDIGERVVLPALRKLGVEHLDMMLLSHADADHAGGA
LAVARRLPVIQVISGDPPGLPAQLNAGTCDSGRQWQWDGVRFQLWQWADAHDSNQRSCVLQIEANGERLLLTGDIDTRAE
RLLLDSPLAVPTQWLQAPHHGSRSSSSMALLKTLQPETVLISRGQGNSFGHPHPTVLARYRKQRLRIYDSAEHGAIHLQL
GTFNAPWTMRQQRRFWRVPPVSAR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=831664 QMK53_RS26020 WP_320328807.1 5837598..5839832(+) (comA) [Pseudomonas sp. P8_139]
ATGCGCACAGGGATGATGGCGCTGGCAGCCGGTCTGCTGGTGGTGGTTTTTTTACCGGTTTTACCGCCGGTCGGGTTACT
GATGTTGTTGCCCGTGGTGGGGCTGATGTTGCTGCCGTTTCGCAGCTATCCGTTGGCATTTTTGCTGTTCGGTTTCACCT
GGGCCTGTGTCAGCGCGCAGTGGGCGCTGAATGATCGGTTGCCGCAACCGCTCGATGGCGAAACGCGCTGGATCGAAGGG
CGGGTGGTGGGGTTGCCGCAGTCCAGCGACGGTGTGGTGCGTTTCGAGTTGGCCGATGCCCGCTCGCGGCACGCGACACT
GCCGTCATTGATGCGGTTGGCGTGGTACGCCGGGCCGCCGCTCAACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAGCTCA
AGCGCCCCGGCGGCTTGCTCAATCCCGATGCCTTCGATTACGAAGCCTGGCTGCTGGCGCAACGCATCGGCGCGACCGGC
ACGGTCAAGGATGGTCAGCGCCTTGCCGAGGCGAGTTGGGCGTGGCGCGACAGCATTCGTCAGCGCTTGCTTGAAGTGGA
CGCTCAGGGCCGGGGCGGTGCATTGGCGGCGCTGGTGCTGGGCGACGGTTCCGGGCTCAGCCGCGAGGATTGGCAGACCC
TGCAGGACACCGGCACCGTGCATTTGTTGGTGATCTCCGGCCAGCACATCGGACTTTTGGCGGCGGTGATGTATCTGCTG
GTCGCCGGGTTGGCGCGTTTTGGGTTGTGGCCGCTGCGCTGGCCCTGGCTGCCCTGGGCCTGTGGTCTGGCGTTTGCGGC
GGCATTGGGTTACGGGGTGCTGGCCGGGTTTGAGGTGCCGGTGCAACGGGCCTGCGTGATGGTCGGGCTGGTGCTGCTGT
GGCGTCTGCGCTTTCGCCATCTCGGTGCGTGGTGGCCGCTGTTGCTGGCGTTCAATGCGGTGCTGTTGCTTGATCCGTTG
GCCAGCCTGCGCCCGGGTTTCTGGTTGTCTTTCGCGGCGGTGGCGGTGCTGATTTTCACCTTCGGCAGCCGCCTTGGCGC
GTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAATGGCTGATTGCGATTGGCCTGTGCCCGGTGTTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGACCGCTGGCGAATTTGCTGGCGGTACCGTGGGTCAGCTTCGTCGTGTTGCCACCGGCGCTG
CTCGGCACGGCGCTGTTACCAGTGCCCTATGTCGGCGAAGGTCTGTTGTGGCTGGCAGGTGGACTGATCGATGTGCTGTT
TCGCGGCCTGGCGCTGATTGCCGGACAATGGCCGGCGTGGATTCCAGCCTCAGTCTCGTGGTGGGTCTGGATGCTGGGCA
GCCTCGGTGCAGTGATGTTGCTGCTGCCACGTGGAGTACCGATGCGGTCCCTGGGCTGGCCGTTGCTATTGATGCTGGTG
GTGCCGCCGCGTGAGCGACTGCCCGAGGACGTGGCCGATGTCTGGCAGCTCGATGTCGGTCAAGGCCTGGCGATTCTGAT
CCGCACCCGTCATCACGCCGTACTCTACGACGCCGGGCCGCGTTTCGGCGATTTCGATATCGGCGAGCGGGTGGTGTTGC
CGGCACTGCGCAAGCTTGGCGTCGAACATCTGGACATGATGTTGCTCAGTCATGCCGATGCCGATCATGCCGGCGGCGCT
TTGGCGGTGGCGCGCCGCTTGCCGGTGATTCAAGTGATCAGTGGCGATCCGCCGGGATTGCCCGCCCAACTGAACGCCGG
GACGTGTGACAGTGGCCGGCAATGGCAATGGGACGGTGTGCGTTTCCAACTCTGGCAGTGGGCCGACGCGCACGACAGCA
ACCAGCGTTCCTGTGTGCTGCAGATCGAGGCCAATGGCGAGCGCCTGCTGCTCACCGGCGATATCGACACCCGCGCCGAA
CGCCTCCTGCTCGACAGCCCGTTGGCCGTCCCCACGCAATGGCTGCAGGCACCGCATCATGGCAGCCGCAGTTCGTCATC
CATGGCGCTGCTCAAAACCCTGCAGCCCGAAACAGTGCTGATCTCCCGAGGCCAGGGCAATTCGTTCGGCCACCCGCATC
CCACCGTGCTCGCGCGTTATCGCAAACAGCGCCTGCGCATTTACGACAGCGCCGAACATGGCGCCATTCATCTGCAACTG
GGGACCTTCAACGCGCCGTGGACAATGCGTCAGCAGCGGCGTTTCTGGCGTGTTCCGCCCGTGTCGGCCCGTTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.953

96.505

0.608