Detailed information NTG0831656

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QMK53_RS22355
• Genome accession: NZ_CP125379
• Coordinates: 5039458..5040804 (-)
• Length: 448 a.a.
• NCBI ID: WP_320329066.1
• Uniprot ID: -
• Organism: Pseudomonas sp. P8_139
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5034458..5045804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMK53_RS22340 (QMK53_22335)	-	5034661..5037750 (+)	3090	WP_320329069.1	pilus assembly protein	-
QMK53_RS22345 (QMK53_22340)	-	5037766..5038167 (+)	402	WP_320329068.1	type IV pilin protein	-
QMK53_RS22350 (QMK53_22345)	thiO	5038225..5039325 (+)	1101	WP_320329067.1	glycine oxidase ThiO	-
QMK53_RS22355 (QMK53_22350)	pilR	5039458..5040804 (-)	1347	WP_320329066.1	sigma-54 dependent transcriptional regulator	Regulator
QMK53_RS22360 (QMK53_22355)	pilS	5040801..5042390 (-)	1590	WP_102356479.1	sensor histidine kinase	Regulator
QMK53_RS22365 (QMK53_22360)	-	5042380..5042613 (-)	234	WP_102356478.1	PP0621 family protein	-
QMK53_RS22370 (QMK53_22365)	-	5042741..5043760 (-)	1020	WP_102356477.1	outer membrane protein assembly factor BamD	-
QMK53_RS22375 (QMK53_22370)	rluD	5043912..5044874 (+)	963	WP_102356476.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
QMK53_RS22380 (QMK53_22375)	pgeF	5044871..5045593 (+)	723	WP_102356475.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50010.31 Da
• Isoelectric Point: 6.7010

>NTDB_id=831656 QMK53_RS22355 WP_320329066.1 5039458..5040804(-) (pilR) [Pseudomonas sp. P8_139]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLQRNAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVNTALRMPATGGSVTSIDRRLLGDSPPMRALRKQIDKLARSQA
PIYISGESGSGKELVARLIHEQGPRSSQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHRGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVATGRFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHMLQRLASGSGQAAARLHPQALEALKSYRFPGNVRELENVLERAHTLCENQVIEAEDLRLSDGNCAVEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=831656 QMK53_RS22355 WP_320329066.1 5039458..5040804(-) (pilR) [Pseudomonas sp. P8_139]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCTTGGG
ACGGATGAAACTCGACACCTTCAGCGCGCGTAATCTCGGCGAAGCCCAGGCGCTGTTGCAGCGCAATGCGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCGGACGGCACCGGGCTGGAGTTGGTGCAGCACATCCAGCAACGTTATCCACAACTACCG
GTGGCGATGATCACCGCGTACGGCAGCCTGGAAACCGCGATCAACGCCTTGAAGGCCGGGGCCTTCGATTTCCTCACCAA
ACCGGTTGATCTCACCCGCCTGCGCGAACTGGTCAACACCGCGCTGCGCATGCCTGCCACCGGCGGCAGCGTCACGTCGA
TCGACCGCCGCCTGCTGGGCGACTCACCGCCGATGCGCGCTCTGCGTAAACAGATCGACAAGCTCGCCCGCAGTCAGGCA
CCGATCTATATCAGCGGCGAATCCGGCAGCGGCAAAGAGCTGGTCGCGCGACTGATCCACGAACAGGGGCCGCGCAGCAG
CCAGCCGTTCGTGCCGGTCAACTGCGGGGCGATTCCGTCAGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGCAAGGGCA
GCTTCACCGGTGCGGTAGAAGACAAACCGGGGCTGTTTCAGGCCGCGCACCGCGGCACCCTGTTTCTCGATGAAGTGGCG
GACCTGCCACTGTCGATGCAAGTCAAACTTCTGCGGGCGATCCAGGAAAAAGCTGTACGTAGCGTTGGCGGCCAACAGGA
AACCGTGGTCGATGTGCGCATCCTTTGCGCCACCCACAAGGACCTGGAAGCGGAAGTCGCCACCGGGCGCTTTCGCCAGG
ATCTGTATTACCGGTTGAACGTGATCGAACTGCGGGTGCCGTCCCTGCGCGAACGGCGCGACGATATCGAAGTACTCGCC
GCGCACATGCTCCAGCGTCTGGCCAGCGGCAGCGGTCAAGCGGCTGCCCGCCTGCACCCGCAAGCGCTTGAAGCGCTGAA
AAGCTATCGCTTTCCGGGGAATGTGCGGGAACTGGAGAACGTCCTCGAACGGGCGCACACGCTGTGCGAAAACCAGGTGA
TCGAGGCTGAAGATTTGCGCCTGAGCGATGGGAATTGTGCAGTCGAGGGCGGCATTGCCGACCTGACGCAGATCGACAAC
CTTGAGGATTACCTGGAGAACGTCGAGCGCAAACTGATCCTTCAGGCGCTGGAGGAGACTCGCTGGAACCGCACGGCGGC
GGCGCAGCGGCTGAGTCTTTCGTTTCGGTCGATGCGCTACAGACTGAAGAAACTCGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.781	98.884	0.779
pilR	Acinetobacter baumannii strain A118	47.93	100	0.491