Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QMK55_RS09025 Genome accession   NZ_CP125378
Coordinates   2001156..2002745 (+) Length   529 a.a.
NCBI ID   WP_102356479.1    Uniprot ID   -
Organism   Pseudomonas sp. P8_229     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1996156..2007745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK55_RS09005 (QMK55_09000) pgeF 1997953..1998675 (-) 723 WP_102356475.1 peptidoglycan editing factor PgeF -
  QMK55_RS09010 (QMK55_09005) rluD 1998672..1999634 (-) 963 WP_102356476.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QMK55_RS09015 (QMK55_09010) - 1999786..2000805 (+) 1020 WP_102356477.1 outer membrane protein assembly factor BamD -
  QMK55_RS09020 (QMK55_09015) - 2000933..2001166 (+) 234 WP_102356478.1 PP0621 family protein -
  QMK55_RS09025 (QMK55_09020) pilS 2001156..2002745 (+) 1590 WP_102356479.1 sensor histidine kinase Regulator
  QMK55_RS09030 (QMK55_09025) pilR 2002742..2004088 (+) 1347 WP_320329066.1 sigma-54 dependent transcriptional regulator Regulator
  QMK55_RS09035 (QMK55_09030) thiO 2004221..2005321 (-) 1101 WP_320329067.1 glycine oxidase ThiO -
  QMK55_RS09040 (QMK55_09035) - 2005379..2005780 (-) 402 WP_320329068.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58738.47 Da        Isoelectric Point: 6.9389

>NTDB_id=831616 QMK55_RS09025 WP_102356479.1 2001156..2002745(+) (pilS) [Pseudomonas sp. P8_229]
MIAEAVNAHHKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDDLLRSGSWLYLVLNILLVVFLENTRRPAQLF
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAIGALGMVGSSFLLSFSHPLSANDYLQAGTLG
ALCFAASLLVQGLVRRLEVSEHLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAKSLLAQSHLEGHLID
DYSRPLVDRLQLWLNNPSLRPQSLKIPGNGLELQPNFIALEQNPNQQTLVFLEDLAQVAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEQFVAESREQATDR
QTIHLRINSGDFVTLMDPDQLTQILDNLLRNGWRHSALLHDTAQVWLALFIDPDSQLAVLEVQDNGPGVPLDQQPHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=831616 QMK55_RS09025 WP_102356479.1 2001156..2002745(+) (pilS) [Pseudomonas sp. P8_229]
GTGATCGCTGAGGCCGTCAACGCCCACCATAAACAGGCCCAGCGCCTGCTGCGTCTTTATCATTTGTACCGTTTAAGCGT
CGGCATCACGTTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCGACGACGATCTGCTGCGCA
GCGGCAGCTGGTTGTATCTGGTGCTGAACATCCTGCTGGTGGTGTTTCTGGAAAACACCCGGCGTCCGGCGCAGCTGTTC
AGCCTGGCGCTGGTGGATGTCCTGCTGCTGTGCGGTTTGTTCTACGCGGCGGGCGGAGTGGCCAGTGCCATCGGCAACCT
GCTGATTGTTTCGGTAGCCATCAGCAACACCCTGCTACGCCGGCGCATCGGCCTGCTGATTGCCGCCATCGGCGCGCTCG
GAATGGTCGGCTCAAGCTTCCTGCTGAGTTTCAGCCATCCCCTGAGCGCCAATGATTACCTGCAAGCCGGCACCCTCGGC
GCCTTGTGCTTTGCGGCGTCATTGCTGGTCCAGGGCCTGGTTCGGCGTCTGGAAGTCAGCGAGCACCTCGCCGAACAGCG
CGCCAGCGAAGTCGTCAGCCTCGAAGCCCTCAACGCCCTGATTCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACG
AACAACGCCGGGTGCAGTTGGCCAACCACAGCGCCAAAAGCCTGCTGGCCCAATCGCACCTTGAGGGCCATCTGATCGAC
GACTACTCCAGGCCGCTGGTCGATCGCCTGCAGTTGTGGCTGAACAATCCGAGCTTGCGCCCACAGAGCTTGAAGATTCC
CGGCAACGGCCTGGAGCTGCAGCCGAACTTCATCGCCCTCGAACAAAACCCCAACCAGCAAACCCTGGTATTTCTCGAAG
ATCTCGCGCAAGTCGCCCAGCAGGCCCAGCAACTCAAACTCGCCGCGCTCGGGCGCCTGACCGCCGGCATTTCCCATGAA
ATCCGCAATCCGCTGGGCGCCATCAGTCACGCCGCGCAGCTATTGGGTGAGTCCGAGGAACTCGACAGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCGCGTCGCCAGC
AGAGCGCTCCGCAACGGCTGGATCTCAAGCCGTGGCTGGAACAGTTCGTCGCAGAAAGCCGTGAACAGGCCACTGATCGG
CAAACGATCCATTTACGGATCAATTCCGGGGACTTCGTCACGCTGATGGACCCCGACCAGCTCACGCAAATTCTCGACAA
TCTGTTACGCAATGGCTGGCGCCACAGTGCGCTGCTGCATGATACGGCCCAAGTCTGGCTGGCGCTGTTCATCGACCCCG
ACAGCCAGCTGGCGGTGCTTGAAGTCCAGGACAACGGCCCCGGCGTGCCGCTGGATCAGCAACCGCATCTGTTCGAGCCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599